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The map label for this gene is perM [C]

Identifier: 116328176

GI number: 116328176

Start: 1757944

End: 1759071

Strand: Reverse

Name: perM [C]

Synonym: LBL_1500

Alternate gene names: 116328176

Gene position: 1759071-1757944 (Counterclockwise)

Preceding gene: 116328177

Following gene: 116328175

Centisome position: 48.67

GC content: 38.56

Gene sequence:

>1128_bases
ATGGAACCAATTCACATAAACCCGGAACCCGGAAAATACACATTTCTCATTTTTTTTTCGGTCCTATTCGTCTTTACGAT
TGGAATTTTCTTTTTGGTATTTAGGCCTTATCTCTATTCCTCTTTGATGGCTCTGATTTTGTATCTCGCAACCCGAAGAC
CGCACAAGTTACTAAAAGAATATTTAGGAGAGAAGTTTCAGTGGCTTGTTCCTTGGATTATGATTTCCCTCGTTTCTATG
ATCGTACTTGTTCCATCCTATTTTGTAATTCGTACATTGATCGGAGAAACTCTTTCCATTCTTTTTAAACTGAGAATTTC
GTTAAGCGAAGACAAAATTATCGAAACCCTGATGAATTTTGCAATGCTTACGGATTTTATCACGGACAACGAATTCTTTT
GGGTAAAAGTTCCTGAAATCTACGGAGAATTCGCGGAGAATTACGTGGATATTCTTAACTTGGACAGCATCTACGGAATT
CTGAGTAACGCGTCTTCTTTTATTTTAGGAAACATAGAGTTACCCACCGGAATTCTGATGAATCTATTCTTCGCACTTTT
AGTATTATTCTTTCTTTATCAAGACGGAAAAAAAGTGGAACGATTCATTTTGGATAACCTTCCCTTTTCCAAACAATTGG
AAGAACAGGTTGGAAGAAAAGTAGCTTCTGCAGTTCAAACCGTAATCCGAGGAAATCTTATTATATCGATTCTGCAAGGA
GCGGCTGTTTATATTCTTCTTCTGGTCGCGGGAATTTCGAGCCCCTTTTTATACGCGAGTTTAGCCTCATTCTTCTCCAT
CATTCCGGTTGTAGGAACTTCCGTGGTTTGGCTTCCAATCGGACTTTACATCCTATTTTTGGAAAATAATCCGATGATGG
CCTTCTTTTTTATGGGGAGTGCACTGTTTTTTTATCTCGCTTTGGAAAATTTTATAAAACCCAGAATGCTGGATAAAAAA
TTGCAGGCACACCCACTTTTGATCTTTCTGTCGTTGATCGGAGGAATCAAAGAATTCGGAATCATGGGATTAGTGCTGGG
TCCGGTCGTAGTCACATTAGTTGTCATTCTTTGGGATTTTTGGAAACTGTATCGCAAGGAATTAATCTTAAGCAAGGGAC
ATCGGTAG

Upstream 100 bases:

>100_bases
CGAAAGTCAAAATAAAAAAGTCGTTACGATTCAAATCGAAACCGCGAATAACGGAAGTAAAATCAAACTCTTTTATAAAA
ATTCGGGAAATTGATCAGCC

Downstream 100 bases:

>100_bases
TAAACATTGGAAGATTCCAAACCGCTTACCGTTTCGGAAGTCACGAGAATCCTTAAGAACCTAATCACAGGATCCAAAGA
TTTAAAGAATATTTGGGTTC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MEPIHINPEPGKYTFLIFFSVLFVFTIGIFFLVFRPYLYSSLMALILYLATRRPHKLLKEYLGEKFQWLVPWIMISLVSM
IVLVPSYFVIRTLIGETLSILFKLRISLSEDKIIETLMNFAMLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYGI
LSNASSFILGNIELPTGILMNLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKVASAVQTVIRGNLIISILQG
AAVYILLLVAGISSPFLYASLASFFSIIPVVGTSVVWLPIGLYILFLENNPMMAFFFMGSALFFYLALENFIKPRMLDKK
LQAHPLLIFLSLIGGIKEFGIMGLVLGPVVVTLVVILWDFWKLYRKELILSKGHR

Sequences:

>Translated_375_residues
MEPIHINPEPGKYTFLIFFSVLFVFTIGIFFLVFRPYLYSSLMALILYLATRRPHKLLKEYLGEKFQWLVPWIMISLVSM
IVLVPSYFVIRTLIGETLSILFKLRISLSEDKIIETLMNFAMLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYGI
LSNASSFILGNIELPTGILMNLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKVASAVQTVIRGNLIISILQG
AAVYILLLVAGISSPFLYASLASFFSIIPVVGTSVVWLPIGLYILFLENNPMMAFFFMGSALFFYLALENFIKPRMLDKK
LQAHPLLIFLSLIGGIKEFGIMGLVLGPVVVTLVVILWDFWKLYRKELILSKGHR
>Mature_375_residues
MEPIHINPEPGKYTFLIFFSVLFVFTIGIFFLVFRPYLYSSLMALILYLATRRPHKLLKEYLGEKFQWLVPWIMISLVSM
IVLVPSYFVIRTLIGETLSILFKLRISLSEDKIIETLMNFAMLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYGI
LSNASSFILGNIELPTGILMNLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKVASAVQTVIRGNLIISILQG
AAVYILLLVAGISSPFLYASLASFFSIIPVVGTSVVWLPIGLYILFLENNPMMAFFFMGSALFFYLALENFIKPRMLDKK
LQAHPLLIFLSLIGGIKEFGIMGLVLGPVVVTLVVILWDFWKLYRKELILSKGHR

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 42934; Mature: 42934

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPIHINPEPGKYTFLIFFSVLFVFTIGIFFLVFRPYLYSSLMALILYLATRRPHKLLKE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YLGEKFQWLVPWIMISLVSMIVLVPSYFVIRTLIGETLSILFKLRISLSEDKIIETLMNF
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AMLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYGILSNASSFILGNIELPTGILM
HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
NLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKVASAVQTVIRGNLIISILQG
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVYILLLVAGISSPFLYASLASFFSIIPVVGTSVVWLPIGLYILFLENNPMMAFFFMGS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHH
ALFFYLALENFIKPRMLDKKLQAHPLLIFLSLIGGIKEFGIMGLVLGPVVVTLVVILWDF
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WKLYRKELILSKGHR
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MEPIHINPEPGKYTFLIFFSVLFVFTIGIFFLVFRPYLYSSLMALILYLATRRPHKLLKE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YLGEKFQWLVPWIMISLVSMIVLVPSYFVIRTLIGETLSILFKLRISLSEDKIIETLMNF
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AMLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYGILSNASSFILGNIELPTGILM
HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
NLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKVASAVQTVIRGNLIISILQG
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVYILLLVAGISSPFLYASLASFFSIIPVVGTSVVWLPIGLYILFLENNPMMAFFFMGS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHH
ALFFYLALENFIKPRMLDKKLQAHPLLIFLSLIGGIKEFGIMGLVLGPVVVTLVVILWDF
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WKLYRKELILSKGHR
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]