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The map label for this gene is xseB

Identifier: 116328174

GI number: 116328174

Start: 1756376

End: 1756666

Strand: Reverse

Name: xseB

Synonym: LBL_1498

Alternate gene names: 116328174

Gene position: 1756666-1756376 (Counterclockwise)

Preceding gene: 116328175

Following gene: 116328173

Centisome position: 48.6

GC content: 43.3

Gene sequence:

>291_bases
ATGGCGGAAGCAAGATCAAAAATTTCATTTGAAGATGCTCTGGTTGAGCTGGAACAAATCGCGGAAAAATTGGAGCGCCA
AGACTTTAGTCTGGAAGAGTCTCTCAAGGCGTATGAAAGGGGGATGGAACTCAAAAAAATCTGCCGGGGAATTTTGGATT
CTGCGGAAGGAAAGATAGAAGCCCTTACCAAAGACGAGTCGCAAAAGACAAACAAAACCGGTTTTCGGACAGAATCCAAA
TCGACATCCCAAACTTCCTCCGATTCCGTTTTAGAAGAAGATCTCTTTTAA

Upstream 100 bases:

>100_bases
GAAAAATCATACGATCTCCGGAAGAAACAAAGCCGGAAGAAGAATTGCAAGTTTTACTTTCGGGTGGAACGATGCAAGTA
ATCAGAAAAGGAAAGTAAGA

Downstream 100 bases:

>100_bases
TTTTCCGGAAAAACTACGTTGAATCTGCAGTGGACATAACTAAAGCAATGGTTGCATTTTTCCTTCACTCTCTTCAACTT
TATTTTTTGATCTGTTAATT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MAEARSKISFEDALVELEQIAEKLERQDFSLEESLKAYERGMELKKICRGILDSAEGKIEALTKDESQKTNKTGFRTESK
STSQTSSDSVLEEDLF

Sequences:

>Translated_96_residues
MAEARSKISFEDALVELEQIAEKLERQDFSLEESLKAYERGMELKKICRGILDSAEGKIEALTKDESQKTNKTGFRTESK
STSQTSSDSVLEEDLF
>Mature_95_residues
AEARSKISFEDALVELEQIAEKLERQDFSLEESLKAYERGMELKKICRGILDSAEGKIEALTKDESQKTNKTGFRTESKS
TSQTSSDSVLEEDLF

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_LEPBJ (Q04TB2)

Other databases:

- EMBL:   CP000350
- RefSeq:   YP_800616.1
- ProteinModelPortal:   Q04TB2
- SMR:   Q04TB2
- STRING:   Q04TB2
- GeneID:   4410783
- GenomeReviews:   CP000350_GR
- KEGG:   lbj:LBJ_1273
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   CEELLRT
- ProtClustDB:   PRK14069
- BioCyc:   LBOR355277:LBJ_1273-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 10854; Mature: 10723

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEARSKISFEDALVELEQIAEKLERQDFSLEESLKAYERGMELKKICRGILDSAEGKIE
CCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH
ALTKDESQKTNKTGFRTESKSTSQTSSDSVLEEDLF
HHHCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
AEARSKISFEDALVELEQIAEKLERQDFSLEESLKAYERGMELKKICRGILDSAEGKIE
CCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH
ALTKDESQKTNKTGFRTESKSTSQTSSDSVLEEDLF
HHHCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA