| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
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The map label for this gene is oppD [H]
Identifier: 116328072
GI number: 116328072
Start: 1600374
End: 1601141
Strand: Direct
Name: oppD [H]
Synonym: LBL_1369
Alternate gene names: 116328072
Gene position: 1600374-1601141 (Clockwise)
Preceding gene: 116328071
Following gene: 116328073
Centisome position: 44.28
GC content: 44.27
Gene sequence:
>768_bases GTGGATTCTTCCCTAGTCGAAATCACGGGTCTCAAGGTTTCCGTACCCGGTCGTTCCATTCTCAAAGGAATCGACTTCAC TCTTCGTTCCGGGGAAATACATTGTATCGTGGGAGAATCGGGAAGCGGCAAATCTACGTTTGCATCTTGCCTTCTAGGAA TGACGGACAAGGAATTTTTTCAGAGATCCGATCGGTTTTTACTTTTAGGTCAGGATGTTCGATATCTTACGGAAAAAGAA TGGAGAATTTTTCGGGGCAAGAGGATCTCCCTGGTTCCTCAAAATCCAATTTGGGGTTTCCATCCCTACCGTAAAACGGG TTCTCAGATCGTAGAAGCGTTTTCTATTTCCAATCGAGAAATTGCGGAAAAAAAGAAAATTCTTTCTTTATTAGAATCTA TTCATATAGCGGAGCCGGAAAAAGCGTTCGATTCTTTGCCGGGCCATCTTTCTGGGGGAGAAAGACAGAGGATTCTCATT CTATTAGCCGTTTATTCCGGTGCTCAGATTGTAGTTGCGGACGAACCCACTGCGGCTTTGGATTCGATCAGCGAGGCGGA AGTACTCAGACTTCTCATGAAATTTAGGAGGGAAAAGGGACTTTCTCTCATTTTTATTACACACGAAATCTCTATCGTCA AAGCTTTGGCCGATACTATAAGTATCCTCTATCGGGGAAATTGGGCCGAAACTTTCACGAGGTCCAGCGAGGGCAAATTG ATTCCGAGCTCGGAGTATGGAAAAAAACTGTTTGAACAAGGAAGTTGA
Upstream 100 bases:
>100_bases AAAGTAACCGCTAGAATTCAAGAGTCTCACATTTTAATCGGACATATCCTTTGTAGTATCGTGGAATATAATCTTTTCAA AATGGAATGATCGCTTTTTC
Downstream 100 bases:
>100_bases TCTAAGATAGTCGGGTGCGAATGATGGGTTATGCGGTTCTCCTAACACTGATTTTATTTTCCTTTCCGCTTTTTTCACAA AAGTCACCGTTTATCTTGGA
Product: ATP-binding protein of an ABC transporter complex
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MDSSLVEITGLKVSVPGRSILKGIDFTLRSGEIHCIVGESGSGKSTFASCLLGMTDKEFFQRSDRFLLLGQDVRYLTEKE WRIFRGKRISLVPQNPIWGFHPYRKTGSQIVEAFSISNREIAEKKKILSLLESIHIAEPEKAFDSLPGHLSGGERQRILI LLAVYSGAQIVVADEPTAALDSISEAEVLRLLMKFRREKGLSLIFITHEISIVKALADTISILYRGNWAETFTRSSEGKL IPSSEYGKKLFEQGS
Sequences:
>Translated_255_residues MDSSLVEITGLKVSVPGRSILKGIDFTLRSGEIHCIVGESGSGKSTFASCLLGMTDKEFFQRSDRFLLLGQDVRYLTEKE WRIFRGKRISLVPQNPIWGFHPYRKTGSQIVEAFSISNREIAEKKKILSLLESIHIAEPEKAFDSLPGHLSGGERQRILI LLAVYSGAQIVVADEPTAALDSISEAEVLRLLMKFRREKGLSLIFITHEISIVKALADTISILYRGNWAETFTRSSEGKL IPSSEYGKKLFEQGS >Mature_255_residues MDSSLVEITGLKVSVPGRSILKGIDFTLRSGEIHCIVGESGSGKSTFASCLLGMTDKEFFQRSDRFLLLGQDVRYLTEKE WRIFRGKRISLVPQNPIWGFHPYRKTGSQIVEAFSISNREIAEKKKILSLLESIHIAEPEKAFDSLPGHLSGGERQRILI LLAVYSGAQIVVADEPTAALDSISEAEVLRLLMKFRREKGLSLIFITHEISIVKALADTISILYRGNWAETFTRSSEGKL IPSSEYGKKLFEQGS
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI255708477, Length=236, Percent_Identity=30.0847457627119, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI9961252, Length=224, Percent_Identity=31.6964285714286, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI4505771, Length=224, Percent_Identity=31.6964285714286, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI9961250, Length=224, Percent_Identity=31.6964285714286, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI42490749, Length=251, Percent_Identity=30.2788844621514, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI42741659, Length=244, Percent_Identity=32.3770491803279, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI156105685, Length=226, Percent_Identity=29.2035398230088, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI148612844, Length=228, Percent_Identity=30.2631578947368, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI21536376, Length=218, Percent_Identity=26.605504587156, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI116734710, Length=216, Percent_Identity=24.537037037037, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1789963, Length=220, Percent_Identity=31.8181818181818, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1787759, Length=240, Percent_Identity=34.1666666666667, Blast_Score=140, Evalue=6e-35, Organism=Escherichia coli, GI1788506, Length=245, Percent_Identity=31.4285714285714, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI48994883, Length=238, Percent_Identity=31.5126050420168, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI145693107, Length=227, Percent_Identity=32.15859030837, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1789962, Length=224, Percent_Identity=33.9285714285714, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787758, Length=264, Percent_Identity=28.4090909090909, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787548, Length=258, Percent_Identity=28.6821705426357, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1787500, Length=218, Percent_Identity=32.1100917431193, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1789890, Length=214, Percent_Identity=26.6355140186916, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1786398, Length=218, Percent_Identity=28.4403669724771, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=32, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=31.7596566523605, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787547, Length=235, Percent_Identity=26.8085106382979, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1789891, Length=243, Percent_Identity=29.6296296296296, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787792, Length=217, Percent_Identity=30.8755760368664, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI48994997, Length=243, Percent_Identity=27.9835390946502, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=27.6595744680851, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=27.0531400966184, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=27.0491803278689, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=29.5454545454545, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789672, Length=221, Percent_Identity=28.0542986425339, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=28.125, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787370, Length=224, Percent_Identity=22.7678571428571, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789032, Length=249, Percent_Identity=26.9076305220884, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789873, Length=204, Percent_Identity=27.9411764705882, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786563, Length=223, Percent_Identity=25.1121076233184, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786698, Length=209, Percent_Identity=28.2296650717703, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787143, Length=239, Percent_Identity=28.8702928870293, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=25.5605381165919, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788210, Length=234, Percent_Identity=24.7863247863248, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788897, Length=241, Percent_Identity=26.1410788381743, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788644, Length=225, Percent_Identity=27.1111111111111, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790739, Length=227, Percent_Identity=22.9074889867841, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786319, Length=232, Percent_Identity=26.7241379310345, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788450, Length=239, Percent_Identity=23.8493723849372, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787089, Length=237, Percent_Identity=24.0506329113924, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788053, Length=230, Percent_Identity=23.4782608695652, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI87081791, Length=231, Percent_Identity=24.2424242424242, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787112, Length=221, Percent_Identity=28.0542986425339, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786981, Length=210, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI1787972, Length=263, Percent_Identity=26.2357414448669, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789593, Length=221, Percent_Identity=28.0542986425339, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71996550, Length=223, Percent_Identity=35.4260089686099, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI193208177, Length=228, Percent_Identity=32.0175438596491, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI115534520, Length=216, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17541710, Length=237, Percent_Identity=29.535864978903, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193209708, Length=228, Percent_Identity=32.0175438596491, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565938, Length=219, Percent_Identity=27.8538812785388, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI115533592, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17567269, Length=235, Percent_Identity=29.3617021276596, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI25146777, Length=238, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17543740, Length=237, Percent_Identity=27.4261603375527, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17511077, Length=215, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI115535101, Length=229, Percent_Identity=27.5109170305677, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569143, Length=245, Percent_Identity=29.3877551020408, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567265, Length=211, Percent_Identity=27.9620853080569, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17569145, Length=237, Percent_Identity=28.6919831223629, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115533608, Length=221, Percent_Identity=26.6968325791855, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=216, Percent_Identity=30.0925925925926, Blast_Score=79, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6323217, Length=249, Percent_Identity=30.9236947791165, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324985, Length=240, Percent_Identity=26.25, Blast_Score=72, Evalue=9e-14, Organism=Drosophila melanogaster, GI24641565, Length=227, Percent_Identity=28.6343612334802, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357907, Length=225, Percent_Identity=29.3333333333333, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI85726357, Length=227, Percent_Identity=30.3964757709251, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI45551502, Length=232, Percent_Identity=32.7586206896552, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI45551501, Length=232, Percent_Identity=32.7586206896552, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357851, Length=232, Percent_Identity=32.7586206896552, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666092, Length=222, Percent_Identity=23.8738738738739, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI28574150, Length=211, Percent_Identity=25.1184834123223, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007328, Length=211, Percent_Identity=24.6445497630332, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 28449; Mature: 28449
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSSLVEITGLKVSVPGRSILKGIDFTLRSGEIHCIVGESGSGKSTFASCLLGMTDKEFF CCCCEEEEECEEEECCCHHHHHCCCEEEECCEEEEEECCCCCCHHHHHHHHHCCCCHHHH QRSDRFLLLGQDVRYLTEKEWRIFRGKRISLVPQNPIWGFHPYRKTGSQIVEAFSISNRE HCCCCEEEEECCHHHHHHHHHHEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHH IAEKKKILSLLESIHIAEPEKAFDSLPGHLSGGERQRILILLAVYSGAQIVVADEPTAAL HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHH DSISEAEVLRLLMKFRREKGLSLIFITHEISIVKALADTISILYRGNWAETFTRSSEGKL HCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC IPSSEYGKKLFEQGS CCCHHHHHHHHHCCC >Mature Secondary Structure MDSSLVEITGLKVSVPGRSILKGIDFTLRSGEIHCIVGESGSGKSTFASCLLGMTDKEFF CCCCEEEEECEEEECCCHHHHHCCCEEEECCEEEEEECCCCCCHHHHHHHHHCCCCHHHH QRSDRFLLLGQDVRYLTEKEWRIFRGKRISLVPQNPIWGFHPYRKTGSQIVEAFSISNRE HCCCCEEEEECCHHHHHHHHHHEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHH IAEKKKILSLLESIHIAEPEKAFDSLPGHLSGGERQRILILLAVYSGAQIVVADEPTAAL HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHH DSISEAEVLRLLMKFRREKGLSLIFITHEISIVKALADTISILYRGNWAETFTRSSEGKL HCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC IPSSEYGKKLFEQGS CCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8244921; 11337471 [H]