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The map label for this gene is ydcN [H]

Identifier: 116327751

GI number: 116327751

Start: 1175782

End: 1176396

Strand: Direct

Name: ydcN [H]

Synonym: LBL_1008

Alternate gene names: 116327751

Gene position: 1175782-1176396 (Clockwise)

Preceding gene: 116327748

Following gene: 116327752

Centisome position: 32.53

GC content: 42.11

Gene sequence:

>615_bases
ATGAACCCAACTATGGAAGAGATAGAAACAGATAAAGAGTCTTCTTCTAGTGAGCATATCACGGAAGTTGTCAAAGAAAA
TCTCAAGCTGATTCGCCATACAAAAGGATTCTCTTTGGATAAACTGGCTTCCCGTTGCGGAGTGAGCCGGGCTATGCTTT
CACAGATCGAGCAAGGCAAAAGTGTTCCGACAATTTCCGTTCTTTGGAAGATCGCAAACGGTCTTAATGTTCCTTTTAGT
GAACTTCTCAAGGAAAAAGGCGCCGAAGGTGTGATCGTGATGAAGGCGGAGAACACTAAGGTTTTGTTTTCCAGTTCGAA
AGTTTTCTCCAGTCGTGCTCTTTTTCCGTTTAATGGAAACCGCAAAACCGAATTTTACGAACTCATTTTAAAACCGGGTG
GAATCGAGGTCGCAGAACCCCATTCGTCCGGTACTACTGAAAATATCATTGTTGTTTCCGGTAAACTTCGTCTTCGAGTC
GGCGAAAAAGTTGTGGAATTGGAACCGAAAGATTCCGTTTTTTTCAGAGCCGATATTCCTCACGAATATTCCAACCCAAC
AGATCAGGAAACTCTAATGTATCTGGTGATGGATTATAGAGACGAAATTAATTAA

Upstream 100 bases:

>100_bases
TATAATCCAGTTTATAATAATCGTGATTATAATTTAAGTCTATTTTCCAAGAGATAGTTTTAAGTTGACAAAATTCTGCT
ATATTAGACAAAAAGGGGAG

Downstream 100 bases:

>100_bases
AAGCCTGCTGTTTCTGGTCTGAAGAGGAAAATCCACCAACAATTTCTTGTAGGATTTTTAAAAAGAATGTCAAAACGTTT
TCCCCCGATGATCCTTTTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MNPTMEEIETDKESSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFS
ELLKEKGAEGVIVMKAENTKVLFSSSKVFSSRALFPFNGNRKTEFYELILKPGGIEVAEPHSSGTTENIIVVSGKLRLRV
GEKVVELEPKDSVFFRADIPHEYSNPTDQETLMYLVMDYRDEIN

Sequences:

>Translated_204_residues
MNPTMEEIETDKESSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFS
ELLKEKGAEGVIVMKAENTKVLFSSSKVFSSRALFPFNGNRKTEFYELILKPGGIEVAEPHSSGTTENIIVVSGKLRLRV
GEKVVELEPKDSVFFRADIPHEYSNPTDQETLMYLVMDYRDEIN
>Mature_204_residues
MNPTMEEIETDKESSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFS
ELLKEKGAEGVIVMKAENTKVLFSSSKVFSSRALFPFNGNRKTEFYELILKPGGIEVAEPHSSGTTENIIVVSGKLRLRV
GEKVVELEPKDSVFFRADIPHEYSNPTDQETLMYLVMDYRDEIN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=182, Percent_Identity=32.967032967033, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 22866; Mature: 22866

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTMEEIETDKESSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGK
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHCCC
SVPTISVLWKIANGLNVPFSELLKEKGAEGVIVMKAENTKVLFSSSKVFSSRALFPFNGN
CCCHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCEEEEECCHHHHCCEEECCCCC
RKTEFYELILKPGGIEVAEPHSSGTTENIIVVSGKLRLRVGEKVVELEPKDSVFFRADIP
CCCEEEEEEECCCCCEEECCCCCCCCCEEEEEECEEEEEECCEEEEECCCCCEEEEECCC
HEYSNPTDQETLMYLVMDYRDEIN
CCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPTMEEIETDKESSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGK
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHCCC
SVPTISVLWKIANGLNVPFSELLKEKGAEGVIVMKAENTKVLFSSSKVFSSRALFPFNGN
CCCHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCEEEEECCHHHHCCEEECCCCC
RKTEFYELILKPGGIEVAEPHSSGTTENIIVVSGKLRLRVGEKVVELEPKDSVFFRADIP
CCCEEEEEEECCCCCEEECCCCCCCCCEEEEEECEEEEEECCEEEEECCCCCEEEEECCC
HEYSNPTDQETLMYLVMDYRDEIN
CCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]