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The map label for this gene is glpQ [H]

Identifier: 116327166

GI number: 116327166

Start: 405406

End: 406377

Strand: Direct

Name: glpQ [H]

Synonym: LBL_0345

Alternate gene names: 116327166

Gene position: 405406-406377 (Clockwise)

Preceding gene: 116327159

Following gene: 116327181

Centisome position: 11.22

GC content: 36.63

Gene sequence:

>972_bases
ATGAATGCAAAAATCAAAACTTGGTATTCTTTAGAAATATTATTCGTTCTAATCCTTTGTTTTGGGGTAAATTCCTGTTC
GAATGTGCCGATTATCAATAAACCCTTGAATAAAAGTTTAGACCTACAAGGTCATCGAGGTGCGAGAGGTTTAAGACCTG
AAAATACTTGGCCTGCTTTTGAAGAAGCGATTCGATATGGAATGACCACCTTGGAATTGGACACGGTTCTGACCAAAGAT
AATAAGATTATAATTCATCACGATTCGTTTACCAATCCTACAATTTGTCAGAAAAAGGATGGAACTCAAATCGTATCAAC
TTCGTTATACGAACTAACTCTTTCCGAATTGAAACAACTTGATTGTGGAGCTAAAAAAAATCCTAAATACTCCGAACAAA
TTCCAGTTCCTGGAACTGAGCTGATTACGATCGAGGAATTTTTTACGCTTGTCGCAAACGCCGAAAAGAAAAATCCAAAT
CGAACCAAGTTAAAATTTAACATCGAAACAAAATTTCCGGGCGACAACAATTCCCAAATTCCAATAGGAAAAGTTAAAGA
ACACGTAAATTTATTAGTTCAAGCGATAGAAGGTGCAAAGGTTGCAGATCGAACTACAATTCAATCTTTCTATTTACCAG
CTCTTCCAATTGTAAAAGGGGTAAATCCAAAATTGAAAACAAGCGCACTTTTTTCCCTTACCTATTTTCAAGGAGCCATG
ATGAAATTAGGACTTGAAAACGGAACTCGCCGAGAAGCCATTCAAAAAACATTAGAAGTAAAAGCAGATATCATTTCCCC
TTACTTTTTATACGTAACCGAAGAATTCGTGCAAGAAGTCCATTCCCATAATCTATCGGTGATTCCTTGGACGGTCAATG
ATCCGAAAGTTATGAGAAAATTGATGGATGCAGGAGTCGACGGCATCATCAGCGATTATCCGGATCGTTTGTCTATAGTA
ATTAAAAATTGA

Upstream 100 bases:

>100_bases
TATATTGAACTCACGTTAAAATTAAGTTTTGGAACATGCCGTAAATTGATTTTTAAAAAATGCTTCCCGCAATTCGAAAA
TGGAAAAAAATCCGTTTAAG

Downstream 100 bases:

>100_bases
TTATATTATAGAAATTTGAATCGATATTTCAAAAACTTCAGAAACCATTCGGAGATAATCTTAAATGTTAGAGTTGTTGA
AAAAAAATTAATTCTCTGTC

Product: glycerophosphodiester phosphodiesterase

Products: alcohol; sn-glycerol 3-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNAKIKTWYSLEILFVLILCFGVNSCSNVPIINKPLNKSLDLQGHRGARGLRPENTWPAFEEAIRYGMTTLELDTVLTKD
NKIIIHHDSFTNPTICQKKDGTQIVSTSLYELTLSELKQLDCGAKKNPKYSEQIPVPGTELITIEEFFTLVANAEKKNPN
RTKLKFNIETKFPGDNNSQIPIGKVKEHVNLLVQAIEGAKVADRTTIQSFYLPALPIVKGVNPKLKTSALFSLTYFQGAM
MKLGLENGTRREAIQKTLEVKADIISPYFLYVTEEFVQEVHSHNLSVIPWTVNDPKVMRKLMDAGVDGIISDYPDRLSIV
IKN

Sequences:

>Translated_323_residues
MNAKIKTWYSLEILFVLILCFGVNSCSNVPIINKPLNKSLDLQGHRGARGLRPENTWPAFEEAIRYGMTTLELDTVLTKD
NKIIIHHDSFTNPTICQKKDGTQIVSTSLYELTLSELKQLDCGAKKNPKYSEQIPVPGTELITIEEFFTLVANAEKKNPN
RTKLKFNIETKFPGDNNSQIPIGKVKEHVNLLVQAIEGAKVADRTTIQSFYLPALPIVKGVNPKLKTSALFSLTYFQGAM
MKLGLENGTRREAIQKTLEVKADIISPYFLYVTEEFVQEVHSHNLSVIPWTVNDPKVMRKLMDAGVDGIISDYPDRLSIV
IKN
>Mature_323_residues
MNAKIKTWYSLEILFVLILCFGVNSCSNVPIINKPLNKSLDLQGHRGARGLRPENTWPAFEEAIRYGMTTLELDTVLTKD
NKIIIHHDSFTNPTICQKKDGTQIVSTSLYELTLSELKQLDCGAKKNPKYSEQIPVPGTELITIEEFFTLVANAEKKNPN
RTKLKFNIETKFPGDNNSQIPIGKVKEHVNLLVQAIEGAKVADRTTIQSFYLPALPIVKGVNPKLKTSALFSLTYFQGAM
MKLGLENGTRREAIQKTLEVKADIISPYFLYVTEEFVQEVHSHNLSVIPWTVNDPKVMRKLMDAGVDGIISDYPDRLSIV
IKN

Specific function: Glycerophosphoryl Diester Phosphodiesterase Hydrolyzes Deacylated Phospholipids To G3p And The Corresponding Alcohols. [C]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: 3.1.4.46

Molecular weight: Translated: 36322; Mature: 36322

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKIKTWYSLEILFVLILCFGVNSCSNVPIINKPLNKSLDLQGHRGARGLRPENTWPAF
CCCCEEEEHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
EEAIRYGMTTLELDTVLTKDNKIIIHHDSFTNPTICQKKDGTQIVSTSLYELTLSELKQL
HHHHHHCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
DCGAKKNPKYSEQIPVPGTELITIEEFFTLVANAEKKNPNRTKLKFNIETKFPGDNNSQI
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCC
PIGKVKEHVNLLVQAIEGAKVADRTTIQSFYLPALPIVKGVNPKLKTSALFSLTYFQGAM
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
MKLGLENGTRREAIQKTLEVKADIISPYFLYVTEEFVQEVHSHNLSVIPWTVNDPKVMRK
HEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
LMDAGVDGIISDYPDRLSIVIKN
HHHCCCCCHHHCCCCEEEEEEEC
>Mature Secondary Structure
MNAKIKTWYSLEILFVLILCFGVNSCSNVPIINKPLNKSLDLQGHRGARGLRPENTWPAF
CCCCEEEEHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
EEAIRYGMTTLELDTVLTKDNKIIIHHDSFTNPTICQKKDGTQIVSTSLYELTLSELKQL
HHHHHHCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
DCGAKKNPKYSEQIPVPGTELITIEEFFTLVANAEKKNPNRTKLKFNIETKFPGDNNSQI
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCC
PIGKVKEHVNLLVQAIEGAKVADRTTIQSFYLPALPIVKGVNPKLKTSALFSLTYFQGAM
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
MKLGLENGTRREAIQKTLEVKADIISPYFLYVTEEFVQEVHSHNLSVIPWTVNDPKVMRK
HEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
LMDAGVDGIISDYPDRLSIVIKN
HHHCCCCCHHHCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Ca2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.6 {bis(glycerophospho)glycerol}} 0.2 {glycerophosphoethanolamine}} [C]

Substrates: glycerophosphodiester; H2O

Specific reaction: A glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate

General reaction: Hydrolysis of carboxylic diester [C]

Inhibitor: EDTA; Mg2+; Mn2+ [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 8759838 [H]