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The map label for this gene is ydeB [H]

Identifier: 116327105

GI number: 116327105

Start: 331364

End: 331909

Strand: Direct

Name: ydeB [H]

Synonym: LBL_0280

Alternate gene names: 116327105

Gene position: 331364-331909 (Clockwise)

Preceding gene: 116327104

Following gene: 116327106

Centisome position: 9.17

GC content: 40.84

Gene sequence:

>546_bases
TTGGCTGCCAAAAAGAAAAATTCTGAAATCGAACACAAGGTAGGCGACTACGTAGTCTATCCCATCCATGGGGTTGGGGA
AATTCTTGAAATCTCTAAAAAGAATATCCTTGGTAAAAAGAAGGATTGCTACGTTCTCGAAATCCAGGGTAGTAAGATGA
AGGTTATGATACCTGTTGATAAAGCAGAACAGGTTCGAATTCGCCCTATCATCGATAAAAAAGAGATCAAAAAAGTCATA
GCGCTCCTTAAGAAGGACGAAGTTGACACAGAAGAGGACTGGAAGATCCGCTACCAAAATAACCTCAACAAGATCAAGTC
CGGATCAATTTATGAGGTCGGAGAAGTCTGCAGAAACCTATTTCGTAGAGCAAGTGGAAAAGAACTCTCTATTATGGAGA
GAAAGCTTTATGAAAGTGCCTATAATCTTGTGAAAATGGAAGTTGCATTGAGTAAAGGTGTTACGCAAGAAGAAGCGGGG
AATCTCGTTTCCGACGTATTAGCAAGCACCCTTGCTCCTAGTGAAAAAAAGGCAGAAGAGGACTAA

Upstream 100 bases:

>100_bases
CTCTTAAACTTTAATAGTCTTTTAGGATAATTTTGTTGACTTTTGTCAAAATTCATGCTATTTTCTTACGCAGAGTTTTA
ACGGAAGTTATCATACTTAC

Downstream 100 bases:

>100_bases
AATTCCGCGAAAACTCAAATACAATTAAGGATTTGAGTTATGGTTCATCTCTACAAAGTACTCACGTCTCTATTCCTTTC
TGGAATTACATTTGCAGTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MAAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQVRIRPIIDKKEIKKVI
ALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAG
NLVSDVLASTLAPSEKKAEED

Sequences:

>Translated_181_residues
MAAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQVRIRPIIDKKEIKKVI
ALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAG
NLVSDVLASTLAPSEKKAEED
>Mature_180_residues
AAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQVRIRPIIDKKEIKKVIA
LLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGN
LVSDVLASTLAPSEKKAEED

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 20526; Mature: 20395

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVD
CCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECC
KAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNL
CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
FRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLAPSEKKAEE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
D
C
>Mature Secondary Structure 
AAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVD
CCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECC
KAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNL
CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
FRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLAPSEKKAEE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]