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The map label for this gene is yebA [H]

Identifier: 116327063

GI number: 116327063

Start: 282949

End: 283869

Strand: Reverse

Name: yebA [H]

Synonym: LBL_0236

Alternate gene names: 116327063

Gene position: 283869-282949 (Counterclockwise)

Preceding gene: 116327069

Following gene: 116327062

Centisome position: 7.85

GC content: 39.74

Gene sequence:

>921_bases
ATGAAACGCTCTTTCCAGTATCCAATCGGGTTCGTTACCTTGTTTTTAACCGTTGTTTTTTTTAAAAGTCCGGTCGACTC
CCGCCAAAAATCAGAACTTCTAAAAAATTTAGATTACAACAATCAATCGATAAAAAGGCTCCGAGAGGACGTCAAAAACA
ATCTAAAAGTATCCGTCTCCAATCTGGAAAAGTCGGAACTCACTTCCCTTGAATTTTATCGATACATCGTAAGGAAAGAA
GACAATTTCTTTAAAATTATGGCTCGAACCGGAATGGACATCGATACGATTTCATCGGTCAATTGCCTTTCCTCTCCCTA
TGATATCTATCCTGGGATGGAACTTTTAATTCCCAACATGCGAGGAATTTACGATCTGGAGGAAAAGGAGAATTCTTCTT
CGGTTCAAAAAAAACTTTCTAAGAAATACAACCTCGTGCAGAAGTTCATCTTTTTCGATGAGAATAAAGGGCTTTGGTTT
ATTCCCGGAAAAGGACTTCCGAAAGAAGAAAAATCTTTCTTTTACGGAATGGCTTTTAATCGCCCTTTGGGCGAAGTGGG
AATCGTATCCTCTCGTTTTGGAAAAAGAAAAGATCCATTTACCAGAAAGGAAACCTTTCACGGCGGATTGGACATCGCTG
CCGAAGAAGGAACTCCGGTTTATGCTTCTGCAGATGGAGAAGTTTACTTTTCCGATAAAAAAGGAGGATATGGAAATTTG
ATCGTTCTAGGTCATAAACTCGGATACGAAACCTTATACGGACATCTGAGCTCCATTTCTGTACGTCCCGGCGAAAAAGT
CAGCAAAGGTCAAAAAATCGGAGAAGTAGGCCAAACCGGAAGAGCAACGGGAAATCATTTGCATTTTGAAGTCAGAAGAT
TCAATCAAAGACAAAAACCTGTGTTTAGGGATCATGTTTAA

Upstream 100 bases:

>100_bases
AAGGATTCCATTGGATCGGGAGTCTTGGTTACAAACATTTCTGTTTCTTTTTTTGCGTCATTGTTTTTTTAGAATCAGCC
GATTCTACACGTATAAGACC

Downstream 100 bases:

>100_bases
AAAAATTTTTCACTTTTTTTCAGTACTGATATTTCTTTCTCTATTCTTCTTGGGTTTTTTATTTTTACGTTCGAATAAAA
GTACCAACCAATATCTTTCC

Product: metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKRSFQYPIGFVTLFLTVVFFKSPVDSRQKSELLKNLDYNNQSIKRLREDVKNNLKVSVSNLEKSELTSLEFYRYIVRKE
DNFFKIMARTGMDIDTISSVNCLSSPYDIYPGMELLIPNMRGIYDLEEKENSSSVQKKLSKKYNLVQKFIFFDENKGLWF
IPGKGLPKEEKSFFYGMAFNRPLGEVGIVSSRFGKRKDPFTRKETFHGGLDIAAEEGTPVYASADGEVYFSDKKGGYGNL
IVLGHKLGYETLYGHLSSISVRPGEKVSKGQKIGEVGQTGRATGNHLHFEVRRFNQRQKPVFRDHV

Sequences:

>Translated_306_residues
MKRSFQYPIGFVTLFLTVVFFKSPVDSRQKSELLKNLDYNNQSIKRLREDVKNNLKVSVSNLEKSELTSLEFYRYIVRKE
DNFFKIMARTGMDIDTISSVNCLSSPYDIYPGMELLIPNMRGIYDLEEKENSSSVQKKLSKKYNLVQKFIFFDENKGLWF
IPGKGLPKEEKSFFYGMAFNRPLGEVGIVSSRFGKRKDPFTRKETFHGGLDIAAEEGTPVYASADGEVYFSDKKGGYGNL
IVLGHKLGYETLYGHLSSISVRPGEKVSKGQKIGEVGQTGRATGNHLHFEVRRFNQRQKPVFRDHV
>Mature_306_residues
MKRSFQYPIGFVTLFLTVVFFKSPVDSRQKSELLKNLDYNNQSIKRLREDVKNNLKVSVSNLEKSELTSLEFYRYIVRKE
DNFFKIMARTGMDIDTISSVNCLSSPYDIYPGMELLIPNMRGIYDLEEKENSSSVQKKLSKKYNLVQKFIFFDENKGLWF
IPGKGLPKEEKSFFYGMAFNRPLGEVGIVSSRFGKRKDPFTRKETFHGGLDIAAEEGTPVYASADGEVYFSDKKGGYGNL
IVLGHKLGYETLYGHLSSISVRPGEKVSKGQKIGEVGQTGRATGNHLHFEVRRFNQRQKPVFRDHV

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=41.2280701754386, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87082174, Length=239, Percent_Identity=28.0334728033473, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1789099, Length=100, Percent_Identity=40, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082297, Length=92, Percent_Identity=42.3913043478261, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 35041; Mature: 35041

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSFQYPIGFVTLFLTVVFFKSPVDSRQKSELLKNLDYNNQSIKRLREDVKNNLKVSVS
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEC
NLEKSELTSLEFYRYIVRKEDNFFKIMARTGMDIDTISSVNCLSSPYDIYPGMELLIPNM
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHCCCCCCCCCCHHEECCCC
RGIYDLEEKENSSSVQKKLSKKYNLVQKFIFFDENKGLWFIPGKGLPKEEKSFFYGMAFN
CCCEECHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCCCCCHHHCEEEEEECC
RPLGEVGIVSSRFGKRKDPFTRKETFHGGLDIAAEEGTPVYASADGEVYFSDKKGGYGNL
CCCCCCCCHHHHCCCCCCCCCHHHHCCCCCEEEECCCCEEEEECCCEEEEECCCCCCCCE
IVLGHKLGYETLYGHLSSISVRPGEKVSKGQKIGEVGQTGRATGNHLHFEVRRFNQRQKP
EEEECCCCHHHHHHHHHCEECCCCHHHHCCCHHHHHCCCCCCCCCEEEEEEEHHCCCCCC
VFRDHV
CCCCCC
>Mature Secondary Structure
MKRSFQYPIGFVTLFLTVVFFKSPVDSRQKSELLKNLDYNNQSIKRLREDVKNNLKVSVS
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEC
NLEKSELTSLEFYRYIVRKEDNFFKIMARTGMDIDTISSVNCLSSPYDIYPGMELLIPNM
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHCCCCCCCCCCHHEECCCC
RGIYDLEEKENSSSVQKKLSKKYNLVQKFIFFDENKGLWFIPGKGLPKEEKSFFYGMAFN
CCCEECHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCCCCCHHHCEEEEEECC
RPLGEVGIVSSRFGKRKDPFTRKETFHGGLDIAAEEGTPVYASADGEVYFSDKKGGYGNL
CCCCCCCCHHHHCCCCCCCCCHHHHCCCCCEEEECCCCEEEEECCCEEEEECCCCCCCCE
IVLGHKLGYETLYGHLSSISVRPGEKVSKGQKIGEVGQTGRATGNHLHFEVRRFNQRQKP
EEEECCCCHHHHHHHHHCEECCCCHHHHCCCHHHHHCCCCCCCCCEEEEEEEHHCCCCCC
VFRDHV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]