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The map label for this gene is tpn50 [H]

Identifier: 116327052

GI number: 116327052

Start: 268660

End: 270036

Strand: Direct

Name: tpn50 [H]

Synonym: LBL_0225

Alternate gene names: 116327052

Gene position: 268660-270036 (Clockwise)

Preceding gene: 116327048

Following gene: 116327053

Centisome position: 7.43

GC content: 38.78

Gene sequence:

>1377_bases
ATGAGGACATTTTCGGATCAGAACTTGAAATCTGAAACTACGGGTCGGGGATTTCTTAAAATTGTATTTTGCGTTATTTT
AATGTTTAGAAACTTTAATCCTCTTTTTTCCGAAGGATCGGAAAAATTTCTTTTTCGTTGGAAGTTGATTCCGGGAGAGA
ACGTTGAGTTAAACGAGTATCATAACGTTCGACTGATAAGTCAAGGAAGAACGATCAAAAGGGAAGATAAGAATCGAATT
CTTTTGCAGACTCTCTCTTGCGAAATGAAAGTATGTCTGTTGGAGGGATTTTTTGATACTTATAGTCGTTTTCCGGAAGT
TGATTCCGCATTTCGTAAAGACAAGACGTTTAAAAGCAGATTTCAAATTACGGATTTAGGACAATACAAGGTCCCACAAG
AATATAGCATGCCGAACCTACGTTCTCTTCCAAGTTTTTCTGAAAAGCCGGTTTCTGTTGGAGACGAATGGACTCAACCT
GCTACGGAAAGTTTTCAATTTCCAGGTGGAAGAGTAATGATTACGGTTTTTGCAAAATATAAGTATCACGGTGTCGACGA
ATGGGAATTTCAGAATTTTTCCGATAAAGGCGATCGTATCGAATACAACTATACGTTACACTATGATTCTCAAATGGGAC
AAGAGGGAATTCCTCTTAAAATTTACGGGTTTGCAAGAGGTATGGTTTTTTTCAATCGTGAACTCGGTCTTCCTCAATAT
AAAAGAGTTCAATTGACTTATACCTTCATTTACGCAAATGGAACGGCTCAGGAAATGTCGTTCGACATTCACGGGGTATA
TAATAAAAACATAAAGCTTACTGATAGTGATAAGGATAAGTTCGCTGAAGAAGTCCGTAAAATTTTGAAAGGAAAACTTC
CTACCGGGATCGAATCAGGTTCTGAACAGAAAAAAAGCTCTAATCCTCCAAGAGAAACTCTTTCTTGGCCTGAAGAAGAG
GAGAATAAAACTAAACAGGAAACAATGAAAGTTTCGGGTTCTCCGGTTGAAATTCGAAGAACGGAAGAGGGAATCGCGAT
TTCATTAAACTCGGTGTTATTTGATTACAATAGTTCCCAACTCAAAGACGAAGCGAAACTCGAATTAAGAAGAATCGCAT
CCGTATTGAAAAAATACGGAGACAGAGAGATCAGGATTAGTGGTCATACCGACAACTCAGGCGGGGATGAATACAACCGA
AAACTTTCCAGAGAACGTGCTCTTTCCGTTTTAAAGGAACTTAGAGACGAACAGGGTTTGGAAGAAAAAAGGATGTCTTA
TGAAGGATATGGAAAATCGAAACCAATCGCCGATAATTCTACGGCCCAGGGCAGACAAAAAAACCGTCGGGTTGATATTA
CCATCGTGATGGAATAG

Upstream 100 bases:

>100_bases
AAGTAAAAATCCTAATTTTAAATTTCGTCCGGATCGTATTTTTTCGGAAAGTTTTTTATAGTTTCCTTATGTTTTAGTGA
AATTTTACGAAACTATAACT

Downstream 100 bases:

>100_bases
TTTTAAAATCCGAACTGATCCACCTAACTCTGAATTGGGAACTGATTAACAAAGTGAAAGTTCTACAGAAATTACTAGAA
GCTATCTCAAAAATATCTTG

Product: OmpA-family protein

Products: NA

Alternate protein names: Antigen tpp57 [H]

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MRTFSDQNLKSETTGRGFLKIVFCVILMFRNFNPLFSEGSEKFLFRWKLIPGENVELNEYHNVRLISQGRTIKREDKNRI
LLQTLSCEMKVCLLEGFFDTYSRFPEVDSAFRKDKTFKSRFQITDLGQYKVPQEYSMPNLRSLPSFSEKPVSVGDEWTQP
ATESFQFPGGRVMITVFAKYKYHGVDEWEFQNFSDKGDRIEYNYTLHYDSQMGQEGIPLKIYGFARGMVFFNRELGLPQY
KRVQLTYTFIYANGTAQEMSFDIHGVYNKNIKLTDSDKDKFAEEVRKILKGKLPTGIESGSEQKKSSNPPRETLSWPEEE
ENKTKQETMKVSGSPVEIRRTEEGIAISLNSVLFDYNSSQLKDEAKLELRRIASVLKKYGDREIRISGHTDNSGGDEYNR
KLSRERALSVLKELRDEQGLEEKRMSYEGYGKSKPIADNSTAQGRQKNRRVDITIVME

Sequences:

>Translated_458_residues
MRTFSDQNLKSETTGRGFLKIVFCVILMFRNFNPLFSEGSEKFLFRWKLIPGENVELNEYHNVRLISQGRTIKREDKNRI
LLQTLSCEMKVCLLEGFFDTYSRFPEVDSAFRKDKTFKSRFQITDLGQYKVPQEYSMPNLRSLPSFSEKPVSVGDEWTQP
ATESFQFPGGRVMITVFAKYKYHGVDEWEFQNFSDKGDRIEYNYTLHYDSQMGQEGIPLKIYGFARGMVFFNRELGLPQY
KRVQLTYTFIYANGTAQEMSFDIHGVYNKNIKLTDSDKDKFAEEVRKILKGKLPTGIESGSEQKKSSNPPRETLSWPEEE
ENKTKQETMKVSGSPVEIRRTEEGIAISLNSVLFDYNSSQLKDEAKLELRRIASVLKKYGDREIRISGHTDNSGGDEYNR
KLSRERALSVLKELRDEQGLEEKRMSYEGYGKSKPIADNSTAQGRQKNRRVDITIVME
>Mature_458_residues
MRTFSDQNLKSETTGRGFLKIVFCVILMFRNFNPLFSEGSEKFLFRWKLIPGENVELNEYHNVRLISQGRTIKREDKNRI
LLQTLSCEMKVCLLEGFFDTYSRFPEVDSAFRKDKTFKSRFQITDLGQYKVPQEYSMPNLRSLPSFSEKPVSVGDEWTQP
ATESFQFPGGRVMITVFAKYKYHGVDEWEFQNFSDKGDRIEYNYTLHYDSQMGQEGIPLKIYGFARGMVFFNRELGLPQY
KRVQLTYTFIYANGTAQEMSFDIHGVYNKNIKLTDSDKDKFAEEVRKILKGKLPTGIESGSEQKKSSNPPRETLSWPEEE
ENKTKQETMKVSGSPVEIRRTEEGIAISLNSVLFDYNSSQLKDEAKLELRRIASVLKKYGDREIRISGHTDNSGGDEYNR
KLSRERALSVLKELRDEQGLEEKRMSYEGYGKSKPIADNSTAQGRQKNRRVDITIVME

Specific function: Could function as a porin [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=127, Percent_Identity=39.3700787401575, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788957, Length=107, Percent_Identity=37.3831775700935, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 53149; Mature: 53149

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFSDQNLKSETTGRGFLKIVFCVILMFRNFNPLFSEGSEKFLFRWKLIPGENVELNEY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEEECCCCCCEECCC
HNVRLISQGRTIKREDKNRILLQTLSCEMKVCLLEGFFDTYSRFPEVDSAFRKDKTFKSR
CCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHH
FQITDLGQYKVPQEYSMPNLRSLPSFSEKPVSVGDEWTQPATESFQFPGGRVMITVFAKY
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
KYHGVDEWEFQNFSDKGDRIEYNYTLHYDSQMGQEGIPLKIYGFARGMVFFNRELGLPQY
EECCCCCCCCCCCCCCCCEEEEEEEEEECHHCCCCCCCEEEEEEECCEEEEECCCCCCCC
KRVQLTYTFIYANGTAQEMSFDIHGVYNKNIKLTDSDKDKFAEEVRKILKGKLPTGIESG
EEEEEEEEEEEECCCHHHEEEEEEEEECCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCC
SEQKKSSNPPRETLSWPEEEENKTKQETMKVSGSPVEIRRTEEGIAISLNSVLFDYNSSQ
CHHHHCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEHEEEECCCHH
LKDEAKLELRRIASVLKKYGDREIRISGHTDNSGGDEYNRKLSRERALSVLKELRDEQGL
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
EEKRMSYEGYGKSKPIADNSTAQGRQKNRRVDITIVME
HHHHHCCCCCCCCCCCCCCCCCCCHHCCCEEEEEEEEC
>Mature Secondary Structure
MRTFSDQNLKSETTGRGFLKIVFCVILMFRNFNPLFSEGSEKFLFRWKLIPGENVELNEY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEEECCCCCCEECCC
HNVRLISQGRTIKREDKNRILLQTLSCEMKVCLLEGFFDTYSRFPEVDSAFRKDKTFKSR
CCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHH
FQITDLGQYKVPQEYSMPNLRSLPSFSEKPVSVGDEWTQPATESFQFPGGRVMITVFAKY
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
KYHGVDEWEFQNFSDKGDRIEYNYTLHYDSQMGQEGIPLKIYGFARGMVFFNRELGLPQY
EECCCCCCCCCCCCCCCCEEEEEEEEEECHHCCCCCCCEEEEEEECCEEEEECCCCCCCC
KRVQLTYTFIYANGTAQEMSFDIHGVYNKNIKLTDSDKDKFAEEVRKILKGKLPTGIESG
EEEEEEEEEEEECCCHHHEEEEEEEEECCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCC
SEQKKSSNPPRETLSWPEEEENKTKQETMKVSGSPVEIRRTEEGIAISLNSVLFDYNSSQ
CHHHHCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEHEEEECCCHH
LKDEAKLELRRIASVLKKYGDREIRISGHTDNSGGDEYNRKLSRERALSVLKELRDEQGL
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
EEKRMSYEGYGKSKPIADNSTAQGRQKNRRVDITIVME
HHHHHCCCCCCCCCCCCCCCCCCCHHCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8112835; 7623668; 9665876 [H]