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The map label for this gene is 116327019

Identifier: 116327019

GI number: 116327019

Start: 222844

End: 223407

Strand: Reverse

Name: 116327019

Synonym: LBL_0190

Alternate gene names: NA

Gene position: 223407-222844 (Counterclockwise)

Preceding gene: 116327020

Following gene: 116327018

Centisome position: 6.18

GC content: 33.69

Gene sequence:

>564_bases
ATGAATCAAAGAAAGTTAATTATTCTTTTTGTGGTTATTTTCGGAATTTCTACAAATTGTTTTGGAGATACTTTACCGAC
AATGGAAGAACAGTCAAAAGCATTTCAATTCAATCAACAAGGTATTGCCTTACTGGGTAAAGGAGATTTTATCCAAGCAC
GCTCCTTTTTCGAAAAAGCATCGAAACTACACCCCCAACACCCCGAATATACGAATAATATCGGCGTTACTTACTTGAAC
GAAGGTAAATTAGATCAAGCAATCATGTATTTTACGCAATCGACCGAAAAAAATCCCTCTTATGCAAGAGCTTTTTACAA
TCTCGGTGTTGTTCATCAAAAGCAGCAGAACAATGAAAAAGCTCTTCAAAACTACCTAAAGACGGTTAATATAGACAATT
CTATTACAGAAGCATATTTTAATTTAGGAATTATTTATACTCGCATGGGAAATAAAAAGCAAGCGATTGAAAGTTATCAA
AAATTTATTGATACCGCGCCGGTCGAATACGATAAGCCCAAAAAAGATGCGAAATATAAAATTGAAGAACTAAAAAAGGA
ATGA

Upstream 100 bases:

>100_bases
ATAAAAAACTTAAATTTATAAAATTACTTTTTCAAAAAATTGATTAGAAAATCAACATCCCCCGACAGTGTTGGTTAAAC
AGGAAAATTAAAAATTAGTT

Downstream 100 bases:

>100_bases
AAAGACGGCAGTGCAAATAGCAACTCTGTTCTAGTTATAGAAGATAAATCAGATAAAACAAAGTTAATACACTTTCAATC
GAATTGGAATTCGTGAGGAG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: TPR Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family; TPR Repeat Protein; TPR Domain Containing Protein; Pentapeptide Repeat-Containing Serine/Threonine Kinase; TPR Repeat-Containing Methyltransferase; O-GlcNAc Transferase; Peptidase; TPR Repeat-Containing Serine/Threonin Protein Kinase; Peptidase S1 And S6 Chymotrypsin/Hap; Tetratricopeptide Repeat Protein

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNQRKLIILFVVIFGISTNCFGDTLPTMEEQSKAFQFNQQGIALLGKGDFIQARSFFEKASKLHPQHPEYTNNIGVTYLN
EGKLDQAIMYFTQSTEKNPSYARAFYNLGVVHQKQQNNEKALQNYLKTVNIDNSITEAYFNLGIIYTRMGNKKQAIESYQ
KFIDTAPVEYDKPKKDAKYKIEELKKE

Sequences:

>Translated_187_residues
MNQRKLIILFVVIFGISTNCFGDTLPTMEEQSKAFQFNQQGIALLGKGDFIQARSFFEKASKLHPQHPEYTNNIGVTYLN
EGKLDQAIMYFTQSTEKNPSYARAFYNLGVVHQKQQNNEKALQNYLKTVNIDNSITEAYFNLGIIYTRMGNKKQAIESYQ
KFIDTAPVEYDKPKKDAKYKIEELKKE
>Mature_187_residues
MNQRKLIILFVVIFGISTNCFGDTLPTMEEQSKAFQFNQQGIALLGKGDFIQARSFFEKASKLHPQHPEYTNNIGVTYLN
EGKLDQAIMYFTQSTEKNPSYARAFYNLGVVHQKQQNNEKALQNYLKTVNIDNSITEAYFNLGIIYTRMGNKKQAIESYQ
KFIDTAPVEYDKPKKDAKYKIEELKKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32307150, Length=121, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI32307148, Length=121, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115532692, Length=129, Percent_Identity=29.4573643410853, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115532690, Length=129, Percent_Identity=29.4573643410853, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21602; Mature: 21602

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRKLIILFVVIFGISTNCFGDTLPTMEEQSKAFQFNQQGIALLGKGDFIQARSFFEKA
CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH
SKLHPQHPEYTNNIGVTYLNEGKLDQAIMYFTQSTEKNPSYARAFYNLGVVHQKQQNNEK
HHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHCCCHH
ALQNYLKTVNIDNSITEAYFNLGIIYTRMGNKKQAIESYQKFIDTAPVEYDKPKKDAKYK
HHHHHHHHCCCCCHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
IEELKKE
HHHHCCC
>Mature Secondary Structure
MNQRKLIILFVVIFGISTNCFGDTLPTMEEQSKAFQFNQQGIALLGKGDFIQARSFFEKA
CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH
SKLHPQHPEYTNNIGVTYLNEGKLDQAIMYFTQSTEKNPSYARAFYNLGVVHQKQQNNEK
HHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHCCCHH
ALQNYLKTVNIDNSITEAYFNLGIIYTRMGNKKQAIESYQKFIDTAPVEYDKPKKDAKYK
HHHHHHHHCCCCCHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
IEELKKE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA