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The map label for this gene is yebA [C]

Identifier: 116326931

GI number: 116326931

Start: 106876

End: 107907

Strand: Reverse

Name: yebA [C]

Synonym: LBL_0095

Alternate gene names: 116326931

Gene position: 107907-106876 (Counterclockwise)

Preceding gene: 116326938

Following gene: 116326928

Centisome position: 2.99

GC content: 34.3

Gene sequence:

>1032_bases
ATGCAAAAATATTTTAGAATTTTTTATGTTATTTTTCTAACTCAGTTTTTAAATATTGAAACGATCTTCCCCAAAGATAA
GCCCGGAACCAAAACAAAAGAAGTAAACCATGTAGACACCGCCCATTACAGCTCCAAGAAAGAAAAATCAAAAAAAAATC
GAAAACAAGAAAATTACGAATTCGAAATCATCAAAAAGAAAGAAGCTCTCTTTTTCTTTTCCATTCAAACCAGAAAGTTC
GCGCAAGGCGAACTGCTATTTCTCAAGCTTATCCCTAAAAAAACGGTCCTTTCCAAATTGGATAGAATCAAAATTATTTG
GGAAAAAAAAGAAATTCCTCACACAATGAGTGATTTCATTCTATACGCATGGATTCCGGTTTCTCCGGAATTTAATAAAA
AAAGTGGAATATTGGAAATTCATAATAAAAGTCTTTTTAGAAAAAACGACTATAAAGAATATGAAATTCCCATTCACAAA
ACAAACTTTTCTGAAACAAAAATTTCTTCTCTAATGATCGATAAAAAATATACCTCGGAGGAACTTTCTCAGGAAACTTT
GAATTTCATCGCCGCCTGCTCTCAAGCAAAGGCTAAAGCATTTCAGTCAAAAACCGACTTACAAATTGTATCCGATTTCA
TTTACCCAGTTCAAGAAGTTCACTTTACGAGTCCATTTTATAAAAGACGTATTTATAACAAAACCAAAGGAAAACCTCAT
GGCGGAGTTGATTTTAAAGGTGCAGTGGGAACCCCAATTTACGCGATCAACGATGGAACGGTAATTTTGTCCAGACCGAT
GTATTACGAAGGAAATCTTACTGTAATCGACCACGGCCTAGAAGTTTATTCTTTATATATGCATCAATCCGAATTAAACG
TAAAAGTAGGCGACAAAGTAAAAAAAGGAAGTCAAATCGGTAAAGTGGGCTCCACAGGAATGTCTACAGGCCCTCATCTT
CATTTAGGTCTACGAGTTCAAGGAACGATGGTTGATCCACTTTCTGTAATTGGTCAAAAATTTTTTGATTAA

Upstream 100 bases:

>100_bases
GTATAAACCATATGAAGGCTAAAAAGCAGGTTCACAATTTATTTCCAAATCGTTTTTAGATTGTACTTATTGAACATTTC
TAAAATTATAGTAGGATACG

Downstream 100 bases:

>100_bases
AAATTTTTGAGTATTTTAAAATTATTACACGATAAATTGACGAGCAATTTTAATAAGAAGTCTGACCTAGTGACGAAAAA
GTGGACACCTTTAAAGCGAA

Product: metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MQKYFRIFYVIFLTQFLNIETIFPKDKPGTKTKEVNHVDTAHYSSKKEKSKKNRKQENYEFEIIKKKEALFFFSIQTRKF
AQGELLFLKLIPKKTVLSKLDRIKIIWEKKEIPHTMSDFILYAWIPVSPEFNKKSGILEIHNKSLFRKNDYKEYEIPIHK
TNFSETKISSLMIDKKYTSEELSQETLNFIAACSQAKAKAFQSKTDLQIVSDFIYPVQEVHFTSPFYKRRIYNKTKGKPH
GGVDFKGAVGTPIYAINDGTVILSRPMYYEGNLTVIDHGLEVYSLYMHQSELNVKVGDKVKKGSQIGKVGSTGMSTGPHL
HLGLRVQGTMVDPLSVIGQKFFD

Sequences:

>Translated_343_residues
MQKYFRIFYVIFLTQFLNIETIFPKDKPGTKTKEVNHVDTAHYSSKKEKSKKNRKQENYEFEIIKKKEALFFFSIQTRKF
AQGELLFLKLIPKKTVLSKLDRIKIIWEKKEIPHTMSDFILYAWIPVSPEFNKKSGILEIHNKSLFRKNDYKEYEIPIHK
TNFSETKISSLMIDKKYTSEELSQETLNFIAACSQAKAKAFQSKTDLQIVSDFIYPVQEVHFTSPFYKRRIYNKTKGKPH
GGVDFKGAVGTPIYAINDGTVILSRPMYYEGNLTVIDHGLEVYSLYMHQSELNVKVGDKVKKGSQIGKVGSTGMSTGPHL
HLGLRVQGTMVDPLSVIGQKFFD
>Mature_343_residues
MQKYFRIFYVIFLTQFLNIETIFPKDKPGTKTKEVNHVDTAHYSSKKEKSKKNRKQENYEFEIIKKKEALFFFSIQTRKF
AQGELLFLKLIPKKTVLSKLDRIKIIWEKKEIPHTMSDFILYAWIPVSPEFNKKSGILEIHNKSLFRKNDYKEYEIPIHK
TNFSETKISSLMIDKKYTSEELSQETLNFIAACSQAKAKAFQSKTDLQIVSDFIYPVQEVHFTSPFYKRRIYNKTKGKPH
GGVDFKGAVGTPIYAINDGTVILSRPMYYEGNLTVIDHGLEVYSLYMHQSELNVKVGDKVKKGSQIGKVGSTGMSTGPHL
HLGLRVQGTMVDPLSVIGQKFFD

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=122, Percent_Identity=37.7049180327869, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 39608; Mature: 39608

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKYFRIFYVIFLTQFLNIETIFPKDKPGTKTKEVNHVDTAHYSSKKEKSKKNRKQENYE
CCHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHCCCE
FEIIKKKEALFFFSIQTRKFAQGELLFLKLIPKKTVLSKLDRIKIIWEKKEIPHTMSDFI
EEEEEECCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHEEEEEECCCCCCCHHCEE
LYAWIPVSPEFNKKSGILEIHNKSLFRKNDYKEYEIPIHKTNFSETKISSLMIDKKYTSE
EEEEEECCCCCCCCCCEEEECCCHHHCCCCCCEEECEEEECCCCHHHHHHHEECCCCCHH
ELSQETLNFIAACSQAKAKAFQSKTDLQIVSDFIYPVQEVHFTSPFYKRRIYNKTKGKPH
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
GGVDFKGAVGTPIYAINDGTVILSRPMYYEGNLTVIDHGLEVYSLYMHQSELNVKVGDKV
CCCEECCCCCCCEEEECCCEEEEECCEEECCCEEEEECCCEEEEEEEECCCCCEEECCCH
KKGSQIGKVGSTGMSTGPHLHLGLRVQGTMVDPLSVIGQKFFD
HCCCCCCCCCCCCCCCCCEEEEEEEEECCEECHHHHHHHHHCC
>Mature Secondary Structure
MQKYFRIFYVIFLTQFLNIETIFPKDKPGTKTKEVNHVDTAHYSSKKEKSKKNRKQENYE
CCHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHCCCE
FEIIKKKEALFFFSIQTRKFAQGELLFLKLIPKKTVLSKLDRIKIIWEKKEIPHTMSDFI
EEEEEECCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHEEEEEECCCCCCCHHCEE
LYAWIPVSPEFNKKSGILEIHNKSLFRKNDYKEYEIPIHKTNFSETKISSLMIDKKYTSE
EEEEEECCCCCCCCCCEEEECCCHHHCCCCCCEEECEEEECCCCHHHHHHHEECCCCCHH
ELSQETLNFIAACSQAKAKAFQSKTDLQIVSDFIYPVQEVHFTSPFYKRRIYNKTKGKPH
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
GGVDFKGAVGTPIYAINDGTVILSRPMYYEGNLTVIDHGLEVYSLYMHQSELNVKVGDKV
CCCEECCCCCCCEEEECCCEEEEECCEEECCCEEEEECCCEEEEEEEECCCCCEEECCCH
KKGSQIGKVGSTGMSTGPHLHLGLRVQGTMVDPLSVIGQKFFD
HCCCCCCCCCCCCCCCCCEEEEEEEEECCEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]