| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115353195
Identifier: 115353195
GI number: 115353195
Start: 3461455
End: 3462246
Strand: Direct
Name: 115353195
Synonym: Bamb_3144
Alternate gene names: NA
Gene position: 3461455-3462246 (Clockwise)
Preceding gene: 115353194
Following gene: 115353196
Centisome position: 97.33
GC content: 68.31
Gene sequence:
>792_bases TTGAGCGCACGCCGCCTGCCCAAGCCTCCCGACCTGCCGGCGTCGCTGCGACGCCGGCGCATCTCCCGCAGCCGGCCGCG CGCCGGCACGCCCGTCTGGCTGTTCGATCTCGACAACACGCTGCACCACGCATCGCACGCGATCTTTCCGGAGATCAACC GTGCGATGACGCAGTACATCATCGACACGCTCCAAGTCGGGCGTGCCGAGGCCGACCGCCTGCGCACCGGCTACACGCAG CGCTACGGCGCCGCGCTCCTCGGCCTCACGCGCCATCATCCGATCGATCCGCACGACTTCCTGCGGGTCGTCCACACGTT TGCCGACCTGCCCGCGATGCTGCGCGCCGAGCGCGGCCTCGCGCGCATCATCGCCGCGCTGCCGGGTCGCAAGTTCGTGC TGACCAACGCGCCGGAGAACTACGCGCGCGCGGTACTGCGCGAGCTGCGCATCGAGCGGCTGTTCGAACGCGTGATCGCG ATCGAGCACATGCGCGACCGGCGCACCTGGCGCGCGAAGCCCGACCACACGATGCTGCGCCGGGCCTTGCGTGCCGCGCA CGCGCGGCTGGCCGACGCGATCCTCGTTGAAGATACCCGCAGCCATCTGAAACGCTACAAGCGGCTCGGCATCGGTACCG TATGGATCACCGGCCACCTGCCGGGCCATCTGCCGAGCATCGGCCGTCCACATTATGTCGACCAGCGCATTCGTTCGTTA AAATCGCTCCGACTGGGCACACGATCGGGGCGACAGAAATGCAGCCGACTTACCCGCAGGACCAAGCCGTAA
Upstream 100 bases:
>100_bases GCGGCGTGAAGTCGGTGCACATCGTCGATGGCCGGATCGAGCACTCGGTGCTGCTGGAAATCCTGACCGAGCAGCCGTTC GGCACGATGATCCGCTCGCA
Downstream 100 bases:
>100_bases AGGAAGACCAGGCCACGCCGTCCCGCCCGCGCCCGAAGCCGGGCGAGCGGCGCGTGATGATCCTGCAGACGCTCGCCGCG ATGCTCGAGGTGCCGAAGCC
Product: pyrimidine 5'-nucleotidase
Products: NA
Alternate protein names: Hydrolase; HAD-Superfamily Hydrolase; HAD Family Pyrimidine 5-Nucleotidase; HAD Superfamily Hydrolase; HAD Family Hydrolase; Phosphatase; Hydrolase Protein; HAD Superfamily Protein; Haloacid Dehalogenase Superfamily Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; Phosphoglycolate Phosphatase; Hydrolase Ripening-Related Protein-Like; Hydrolase Of HAD Superfamily
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYIIDTLQVGRAEADRLRTGYTQ RYGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGLARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIA IEHMRDRRTWRAKPDHTMLRRALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSL KSLRLGTRSGRQKCSRLTRRTKP
Sequences:
>Translated_263_residues MSARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYIIDTLQVGRAEADRLRTGYTQ RYGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGLARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIA IEHMRDRRTWRAKPDHTMLRRALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSL KSLRLGTRSGRQKCSRLTRRTKP >Mature_262_residues SARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYIIDTLQVGRAEADRLRTGYTQR YGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGLARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIAI EHMRDRRTWRAKPDHTMLRRALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSLK SLRLGTRSGRQKCSRLTRRTKP
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6321214, Length=202, Percent_Identity=24.2574257425743, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30396; Mature: 30265
Theoretical pI: Translated: 12.21; Mature: 12.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYI CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH IDTLQVGRAEADRLRTGYTQRYGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGL HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIAIEHMRDRRTWRAKPDHTMLR HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH RALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH KSLRLGTRSGRQKCSRLTRRTKP HHHHHCHHHHHHHHHHHHHCCCC >Mature Secondary Structure SARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYI CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH IDTLQVGRAEADRLRTGYTQRYGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGL HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIAIEHMRDRRTWRAKPDHTMLR HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH RALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH KSLRLGTRSGRQKCSRLTRRTKP HHHHHCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA