| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115353174
Identifier: 115353174
GI number: 115353174
Start: 3442379
End: 3443260
Strand: Direct
Name: 115353174
Synonym: Bamb_3123
Alternate gene names: NA
Gene position: 3442379-3443260 (Clockwise)
Preceding gene: 115353173
Following gene: 115353175
Centisome position: 96.79
GC content: 70.52
Gene sequence:
>882_bases ATGGTTTCGTTCAAACGCGCGCTCGCCGCGCATGGCGTGACGTCGCTCTTCGTGCTGCTGTGGAGCAGCGGCGCGATCTT CGCTGAACTCGGTCTGCGTCATGCATCCGCGTTCGTCTTTCTCACCGCACGTTTCGCGCTCGCGTCACTCGTGCTGCTCG TCCTGGCCGTCATGCGCGGCCGCTGGCTGCCGCCGCGCGGCGAGCGGCGCATGGCCGCGCTGACCGGCCTGATGATGATG GGCGGCTATTCGATCTTCTACCTGCTCGCGCTCGATCAGGGGATCGCACCGGGCGTGCTCGCGACGATCCTCGGCGTGCA GCCGATCGTCACGCTCGCGATGGTCGAGCGGCGCTGGCAACCGATGCGCGTCGCGGGGCTCGCGCTGTCGCTGGCCGGCC TCGCGCTCGTCGTGGGCCGCGGCGTGGGCGGCGCCGGGCTGCCGATCATCGGCATCGCCTGCGCGCTCACGGCACTCGCC GCGCTGACCGTCGGCTCGCTGCTGCAAAAGCGCGTGCGTGCGGCGCCCGGCGACGTGCTGCCGCTGCAGAACGCGATCGG CCTCGCGCTGTGCGTGGCGATCCTGCCGTTCCGGCCCATCGCGCTCGATGCGAGCTGGGCGTTCGTCGTGCCGCTGCTGT GGCTCGGCATCGTGATCTCGGTGATCGCGCAGTTGCTGTTCTACCGGTTGATGCAGCGCGGCGATCTCGTCAACGTGACG AGCCTGTTCTATCTCGTGCCCGTCGTCACCACGCTGATGGACGCGGTCTGGCTCGGCAACCGGCCGGCGCCGCTCGCGCT CGCCGGCATGGCGGCGATCGTCGCGGGGCTCGTGCTCGTGTTCCGCACACCGGCCGCTCGCGCGCAACCCGAGCGCGCGT AA
Upstream 100 bases:
>100_bases TTCCATTCGCCCGTTTGCAGCCGTTCGTGCGTCGTCACGCACAGCGCGTTGCCGCGCGCGCGACATGGAACGTATCGATC CGTTCGACAGGTGGATTCAC
Downstream 100 bases:
>100_bases GCGGACGGCCGCCGCACCCATGGTTGCGGCGGCCCGTATCGAACACGTACGACGTTTGGGTGCAAACGGAAAGGAGCCGG AAAGCCGTGCGCAAGGCATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 293; Mature: 293
Protein sequence:
>293_residues MVSFKRALAAHGVTSLFVLLWSSGAIFAELGLRHASAFVFLTARFALASLVLLVLAVMRGRWLPPRGERRMAALTGLMMM GGYSIFYLLALDQGIAPGVLATILGVQPIVTLAMVERRWQPMRVAGLALSLAGLALVVGRGVGGAGLPIIGIACALTALA ALTVGSLLQKRVRAAPGDVLPLQNAIGLALCVAILPFRPIALDASWAFVVPLLWLGIVISVIAQLLFYRLMQRGDLVNVT SLFYLVPVVTTLMDAVWLGNRPAPLALAGMAAIVAGLVLVFRTPAARAQPERA
Sequences:
>Translated_293_residues MVSFKRALAAHGVTSLFVLLWSSGAIFAELGLRHASAFVFLTARFALASLVLLVLAVMRGRWLPPRGERRMAALTGLMMM GGYSIFYLLALDQGIAPGVLATILGVQPIVTLAMVERRWQPMRVAGLALSLAGLALVVGRGVGGAGLPIIGIACALTALA ALTVGSLLQKRVRAAPGDVLPLQNAIGLALCVAILPFRPIALDASWAFVVPLLWLGIVISVIAQLLFYRLMQRGDLVNVT SLFYLVPVVTTLMDAVWLGNRPAPLALAGMAAIVAGLVLVFRTPAARAQPERA >Mature_293_residues MVSFKRALAAHGVTSLFVLLWSSGAIFAELGLRHASAFVFLTARFALASLVLLVLAVMRGRWLPPRGERRMAALTGLMMM GGYSIFYLLALDQGIAPGVLATILGVQPIVTLAMVERRWQPMRVAGLALSLAGLALVVGRGVGGAGLPIIGIACALTALA ALTVGSLLQKRVRAAPGDVLPLQNAIGLALCVAILPFRPIALDASWAFVVPLLWLGIVISVIAQLLFYRLMQRGDLVNVT SLFYLVPVVTTLMDAVWLGNRPAPLALAGMAAIVAGLVLVFRTPAARAQPERA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30933; Mature: 30933
Theoretical pI: Translated: 12.01; Mature: 12.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSFKRALAAHGVTSLFVLLWSSGAIFAELGLRHASAFVFLTARFALASLVLLVLAVMRG CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RWLPPRGERRMAALTGLMMMGGYSIFYLLALDQGIAPGVLATILGVQPIVTLAMVERRWQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC PMRVAGLALSLAGLALVVGRGVGGAGLPIIGIACALTALAALTVGSLLQKRVRAAPGDVL CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PLQNAIGLALCVAILPFRPIALDASWAFVVPLLWLGIVISVIAQLLFYRLMQRGDLVNVT CHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH SLFYLVPVVTTLMDAVWLGNRPAPLALAGMAAIVAGLVLVFRTPAARAQPERA HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MVSFKRALAAHGVTSLFVLLWSSGAIFAELGLRHASAFVFLTARFALASLVLLVLAVMRG CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RWLPPRGERRMAALTGLMMMGGYSIFYLLALDQGIAPGVLATILGVQPIVTLAMVERRWQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC PMRVAGLALSLAGLALVVGRGVGGAGLPIIGIACALTALAALTVGSLLQKRVRAAPGDVL CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PLQNAIGLALCVAILPFRPIALDASWAFVVPLLWLGIVISVIAQLLFYRLMQRGDLVNVT CHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH SLFYLVPVVTTLMDAVWLGNRPAPLALAGMAAIVAGLVLVFRTPAARAQPERA HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA