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The map label for this gene is ybgK [H]

Identifier: 115353134

GI number: 115353134

Start: 3402915

End: 3403985

Strand: Direct

Name: ybgK [H]

Synonym: Bamb_3083

Alternate gene names: 115353134

Gene position: 3402915-3403985 (Clockwise)

Preceding gene: 115353133

Following gene: 115353135

Centisome position: 95.68

GC content: 73.58

Gene sequence:

>1071_bases
ATGAGCCAGAACACCGCACCGGGCACGATCGAGGTCGTCCGCGCCGGCCCGCTGTCGACCGTCCAGGATCTCGGCCGCCG
CGGCACGCGCCATCTCGGCGTCGCGCAGGGCGGCGCGCTCGACGGCCTCGCGCTCGAGGTCGGCAACCGGCTGGTCGGCA
ATCGCCCCGACGCGGCGGCCGTCGAAATCACGATCGGCCCGGCCGCGTTCCGCTTCACGCGCGCGACGCGCATCGCGATC
ACCGGCACCGAATTCGGCGCGACGCTCGACGGCAAGCCCGTGTATTCATGGTGGAGCCTGCCGGTCGAGGCCGGGCAGAC
GCTCGTGCTGCCGGCCGCGAAGCGCGGGATGCGCGGCTACCTGTGCATCGCGGGCGGCGTCGACGTGCTGCCGATGCTCG
GCTCGCGCAGCACCGATCTCGCGTCGCGCTTCGGCGGCCTCGGCGGCCGCGCGCTGCGCGACGGCGATCGGCTTCCGGTC
GGCGTGCCGCCGGCCGGCGCCGGCTGCCTCGCGGCCGATGCGCCCGAATTCGGCGTGAAGGCGCCCATGTGGTGCGCGTT
CGTGCGCGTCGACGAACCCCCGCGCCGCCACCACCGTCCCGCGCACGCGCCGTGGGCGATGCCCGTGCGCGTGCTGCCGG
GCCCCGACTACGCGTCGTTCGCGGCCGATTCGCAGCAGGCGTTCTGGGACGAGGAATGGCTCGTCACCGCGAACAGCAAC
CGGATGGGCTATCGCCTCGCCGGCGCCGAGCTGGTGCGCGAGCGGCCCGTCGAGCTGCTGTCGCACGCGGTGCTGCCCGG
CACGATCCAGGTGCCGCCGAACGGCCAGCCGATCGTGCTGATGCACGATGCGCAGACCACCGGCGGCTATCCGAAGATCG
GCACGGTGATCCACGCGGATCTCTGGAAACTCGCGCAGGCGCGCCTGAACCTGCCGATCCGCTTCGTGCGCACGACGCGC
GACGCCGCGCGCACCGCGCTGAGCGCGGAACGTGCGTATCTGCGGCAGATCGACGTCGCGATCGAGATGCGCGAGGAAAC
GCGCCGCCGCGAGCAATCGCGCGCGGCGTGA

Upstream 100 bases:

>100_bases
GCCGCACGTCGCACGTGCTGTTCGATCCCACGCGGGCGCAGCCGACACTGCTGCTGCCCGGCGACCGCGTACGCTTCACC
ATTGCCGGAGTCGACGCGAC

Downstream 100 bases:

>100_bases
CAATGTCGTAAGCAACAAGGAGGACGCGCCACGCCATCCGTGGACGACGAACATCATGGAAATCGATCTGAATGCCGATC
TCGGCGAAGGATGCGGATCG

Product: urea amidolyase -like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSQNTAPGTIEVVRAGPLSTVQDLGRRGTRHLGVAQGGALDGLALEVGNRLVGNRPDAAAVEITIGPAAFRFTRATRIAI
TGTEFGATLDGKPVYSWWSLPVEAGQTLVLPAAKRGMRGYLCIAGGVDVLPMLGSRSTDLASRFGGLGGRALRDGDRLPV
GVPPAGAGCLAADAPEFGVKAPMWCAFVRVDEPPRRHHRPAHAPWAMPVRVLPGPDYASFAADSQQAFWDEEWLVTANSN
RMGYRLAGAELVRERPVELLSHAVLPGTIQVPPNGQPIVLMHDAQTTGGYPKIGTVIHADLWKLAQARLNLPIRFVRTTR
DAARTALSAERAYLRQIDVAIEMREETRRREQSRAA

Sequences:

>Translated_356_residues
MSQNTAPGTIEVVRAGPLSTVQDLGRRGTRHLGVAQGGALDGLALEVGNRLVGNRPDAAAVEITIGPAAFRFTRATRIAI
TGTEFGATLDGKPVYSWWSLPVEAGQTLVLPAAKRGMRGYLCIAGGVDVLPMLGSRSTDLASRFGGLGGRALRDGDRLPV
GVPPAGAGCLAADAPEFGVKAPMWCAFVRVDEPPRRHHRPAHAPWAMPVRVLPGPDYASFAADSQQAFWDEEWLVTANSN
RMGYRLAGAELVRERPVELLSHAVLPGTIQVPPNGQPIVLMHDAQTTGGYPKIGTVIHADLWKLAQARLNLPIRFVRTTR
DAARTALSAERAYLRQIDVAIEMREETRRREQSRAA
>Mature_355_residues
SQNTAPGTIEVVRAGPLSTVQDLGRRGTRHLGVAQGGALDGLALEVGNRLVGNRPDAAAVEITIGPAAFRFTRATRIAIT
GTEFGATLDGKPVYSWWSLPVEAGQTLVLPAAKRGMRGYLCIAGGVDVLPMLGSRSTDLASRFGGLGGRALRDGDRLPVG
VPPAGAGCLAADAPEFGVKAPMWCAFVRVDEPPRRHHRPAHAPWAMPVRVLPGPDYASFAADSQQAFWDEEWLVTANSNR
MGYRLAGAELVRERPVELLSHAVLPGTIQVPPNGQPIVLMHDAQTTGGYPKIGTVIHADLWKLAQARLNLPIRFVRTTRD
AARTALSAERAYLRQIDVAIEMREETRRREQSRAA

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=329, Percent_Identity=45.2887537993921, Blast_Score=265, Evalue=5e-72,
Organism=Saccharomyces cerevisiae, GI6319685, Length=346, Percent_Identity=29.1907514450867, Blast_Score=128, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 38304; Mature: 38173

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNTAPGTIEVVRAGPLSTVQDLGRRGTRHLGVAQGGALDGLALEVGNRLVGNRPDAAA
CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHCCHHCCCCCCCEE
VEITIGPAAFRFTRATRIAITGTEFGATLDGKPVYSWWSLPVEAGQTLVLPAAKRGMRGY
EEEEECCHHEEEEEEEEEEEECCCCCCCCCCCCEEHEECCHHHCCCEEEEECCCCCCCEE
LCIAGGVDVLPMLGSRSTDLASRFGGLGGRALRDGDRLPVGVPPAGAGCLAADAPEFGVK
EEEECCCCCHHCCCCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCC
APMWCAFVRVDEPPRRHHRPAHAPWAMPVRVLPGPDYASFAADSQQAFWDEEWLVTANSN
CCCEEEEEEECCCHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCHHHCCCCCEEEEECCC
RMGYRLAGAELVRERPVELLSHAVLPGTIQVPPNGQPIVLMHDAQTTGGYPKIGTVIHAD
CCEEEEHHHHHHHHCCHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHH
LWKLAQARLNLPIRFVRTTRDAARTALSAERAYLRQIDVAIEMREETRRREQSRAA
HHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQNTAPGTIEVVRAGPLSTVQDLGRRGTRHLGVAQGGALDGLALEVGNRLVGNRPDAAA
CCCCCCCEEEEEECCCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHCCHHCCCCCCCEE
VEITIGPAAFRFTRATRIAITGTEFGATLDGKPVYSWWSLPVEAGQTLVLPAAKRGMRGY
EEEEECCHHEEEEEEEEEEEECCCCCCCCCCCCEEHEECCHHHCCCEEEEECCCCCCCEE
LCIAGGVDVLPMLGSRSTDLASRFGGLGGRALRDGDRLPVGVPPAGAGCLAADAPEFGVK
EEEECCCCCHHCCCCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCC
APMWCAFVRVDEPPRRHHRPAHAPWAMPVRVLPGPDYASFAADSQQAFWDEEWLVTANSN
CCCEEEEEEECCCHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCHHHCCCCCEEEEECCC
RMGYRLAGAELVRERPVELLSHAVLPGTIQVPPNGQPIVLMHDAQTTGGYPKIGTVIHAD
CCEEEEHHHHHHHHCCHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHH
LWKLAQARLNLPIRFVRTTRDAARTALSAERAYLRQIDVAIEMREETRRREQSRAA
HHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]