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The map label for this gene is ybgJ [H]

Identifier: 115353133

GI number: 115353133

Start: 3402262

End: 3402918

Strand: Direct

Name: ybgJ [H]

Synonym: Bamb_3082

Alternate gene names: 115353133

Gene position: 3402262-3402918 (Clockwise)

Preceding gene: 115353131

Following gene: 115353134

Centisome position: 95.66

GC content: 72.6

Gene sequence:

>657_bases
ATGACGCAACCCCGCATTTATCCGCTCGGCGATGCCGCCCTCGTCTGCGAGGTGCCGCCGCCCGCCACGCTCGATTGCCA
GCGCCGCGTCTGGGCCGTCGCCGAGGTCGCGCGCGCGTGGCCCGACGTGATCGACGTCGTGCCCGGCATGAACAATCTGA
CGATCGTGTTCGACGCGCTCGCCGCGACGGCCGAGTCGCTCACGCCGGCGCTGCGCGACGCGTGGGAAACCGCCGACGTC
GAGCACGCGGAGGGCCGCGAAGTCGAGATTCCCGTCGAATACGGCGGCACCGCCGGCCCCGACCTGCCGGCCGTCGCCGC
GCACACGGGGCTGTCGGCCGACGAAGTCGTCGCGCGCCACGCGGCCGGCGAATACGTCGTGTTCTTCGTCGGCTTCCAGC
CGGGCTTCGCGTATCTCGGCGGCCTCGATGCGTCGCTGCACACGCCGCGCCGCGCGGCGCCGCGCCTGGAAGTGCCGGCC
GGCTCGGTCGGCATCGGCGGTGCGCAGACGGGCATCTATCCAGCCACGTCGCCCGGCGGCTGGCAACTGATCGGCCGCAC
GTCGCACGTGCTGTTCGATCCCACGCGGGCGCAGCCGACACTGCTGCTGCCCGGCGACCGCGTACGCTTCACCATTGCCG
GAGTCGACGCGACATGA

Upstream 100 bases:

>100_bases
AAGCCCCGGCATACGAGCTAGGCGAAAACGCTTATTGGGAAGTTGTCGATATTTTATCGACAATGTGCGCTAACATTGCC
GTCCGAACCGTGCCAGTCCG

Downstream 100 bases:

>100_bases
GCCAGAACACCGCACCGGGCACGATCGAGGTCGTCCGCGCCGGCCCGCTGTCGACCGTCCAGGATCTCGGCCGCCGCGGC
ACGCGCCATCTCGGCGTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEVARAWPDVIDVVPGMNNLTIVFDALAATAESLTPALRDAWETADV
EHAEGREVEIPVEYGGTAGPDLPAVAAHTGLSADEVVARHAAGEYVVFFVGFQPGFAYLGGLDASLHTPRRAAPRLEVPA
GSVGIGGAQTGIYPATSPGGWQLIGRTSHVLFDPTRAQPTLLLPGDRVRFTIAGVDAT

Sequences:

>Translated_218_residues
MTQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEVARAWPDVIDVVPGMNNLTIVFDALAATAESLTPALRDAWETADV
EHAEGREVEIPVEYGGTAGPDLPAVAAHTGLSADEVVARHAAGEYVVFFVGFQPGFAYLGGLDASLHTPRRAAPRLEVPA
GSVGIGGAQTGIYPATSPGGWQLIGRTSHVLFDPTRAQPTLLLPGDRVRFTIAGVDAT
>Mature_217_residues
TQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEVARAWPDVIDVVPGMNNLTIVFDALAATAESLTPALRDAWETADVE
HAEGREVEIPVEYGGTAGPDLPAVAAHTGLSADEVVARHAAGEYVVFFVGFQPGFAYLGGLDASLHTPRRAAPRLEVPAG
SVGIGGAQTGIYPATSPGGWQLIGRTSHVLFDPTRAQPTLLLPGDRVRFTIAGVDAT

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=211, Percent_Identity=54.0284360189574, Blast_Score=232, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 22898; Mature: 22767

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEVARAWPDVIDVVPGMNNLTIVFDAL
CCCCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEHHH
AATAESLTPALRDAWETADVEHAEGREVEIPVEYGGTAGPDLPAVAAHTGLSADEVVARH
HHHHHHHCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCHHHHHHHH
AAGEYVVFFVGFQPGFAYLGGLDASLHTPRRAAPRLEVPAGSVGIGGAQTGIYPATSPGG
CCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
WQLIGRTSHVLFDPTRAQPTLLLPGDRVRFTIAGVDAT
EEEEECCCEEEECCCCCCCEEEECCCCEEEEEEECCCC
>Mature Secondary Structure 
TQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEVARAWPDVIDVVPGMNNLTIVFDAL
CCCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEHHH
AATAESLTPALRDAWETADVEHAEGREVEIPVEYGGTAGPDLPAVAAHTGLSADEVVARH
HHHHHHHCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCHHHHHHHH
AAGEYVVFFVGFQPGFAYLGGLDASLHTPRRAAPRLEVPAGSVGIGGAQTGIYPATSPGG
CCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
WQLIGRTSHVLFDPTRAQPTLLLPGDRVRFTIAGVDAT
EEEEECCCEEEECCCCCCCEEEECCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]