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The map label for this gene is ydcN [C]

Identifier: 115353126

GI number: 115353126

Start: 3394938

End: 3395747

Strand: Direct

Name: ydcN [C]

Synonym: Bamb_3075

Alternate gene names: 115353126

Gene position: 3394938-3395747 (Clockwise)

Preceding gene: 115353124

Following gene: 115353131

Centisome position: 95.46

GC content: 70.12

Gene sequence:

>810_bases
ATGGATTCAGACCTCATGCGTATCGGCCAGCGCATCCGGCGCCTGCGCCGGGAAGCGAAGAAGACGCTGCTGGAAGTCGC
GACCGAGGCGAACCTGTCGATCGGATTCCTGTCGCAGGTCGAGCGCAATCTCACCGGGATCTCGCTGTCGTCGCTCGTCA
ACGTCGCGACGGCGTTGAACGTGCCGCTCGGCACGCTGATCGAGCAGCCGCGCCAGGCGCAGCCCGACTCGCGCGCGGGC
CGCCGCGAACCGTACGCGGTCGACGCCACGTCGCAATGGTACGAACGGCTGTCGACCACCTTCGACGGCAGCCAGATCCA
CGCGCTCAAGGTCCGGATGATGGAGGGCTATCGCTCGGAATGGGTTGCGCACGGCGGCGACGAGTTCGTGTACGTGCTGA
CCGGCCGCGTCTGCTACACGATCGGCAAGAAGGATTACCCGCTGTCGCCCGGCGACTCGCTGCACTTCGACGCGCGCAAG
CGCCATCGCGTCGCGAATGTCGGGGACGGGCCGGCCGAACTGATCGCGGTCGGCACGCTGCCGCTCTTCGACGACAGTTG
CGCCGAGTTCGGCTCCGCGACAATGGAAATCAGGCCGCCCGCGCGCGATGCCGGCCCGACGCCGGGCGAGCCGCGCGTGA
GCCGCCGCGAACCGGCGCAGAAACGAGAGCACGAGCACGCCGCGAACACGGCCGCGCCTGCCGCCGACCTGCCGGCCCGC
GTGGCGGCCAAGCCGGCGGCCAAGCCCGCTGCCGGCAAGCCGCGCGCGACCACGGGCAAACGCCCGGCCGCCACCCACAC
GAAGCAATGA

Upstream 100 bases:

>100_bases
GTCCCGACGGCCATGCGTCGTGCGCTTCGCGGAACGCAACGTCCCGGCGACTGCACCGCCCTTCCGCTCGCCTCCCGACT
CGTTGTCACGAAAGAGATTC

Downstream 100 bases:

>100_bases
CGGCTGGCCGCCGGGCGACGCACCGCGCCACCCGTTTCTTCCGCGCTATTCGCCGATCGCCAGCGCCTGCTTGACGGCCT
CGACCCGTGCGCGATGCACG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Cupin 2 Domain-Containing Protein; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Regulatory Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Protein; XRE Family-Like Protein

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSIGFLSQVERNLTGISLSSLVNVATALNVPLGTLIEQPRQAQPDSRAG
RREPYAVDATSQWYERLSTTFDGSQIHALKVRMMEGYRSEWVAHGGDEFVYVLTGRVCYTIGKKDYPLSPGDSLHFDARK
RHRVANVGDGPAELIAVGTLPLFDDSCAEFGSATMEIRPPARDAGPTPGEPRVSRREPAQKREHEHAANTAAPAADLPAR
VAAKPAAKPAAGKPRATTGKRPAATHTKQ

Sequences:

>Translated_269_residues
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSIGFLSQVERNLTGISLSSLVNVATALNVPLGTLIEQPRQAQPDSRAG
RREPYAVDATSQWYERLSTTFDGSQIHALKVRMMEGYRSEWVAHGGDEFVYVLTGRVCYTIGKKDYPLSPGDSLHFDARK
RHRVANVGDGPAELIAVGTLPLFDDSCAEFGSATMEIRPPARDAGPTPGEPRVSRREPAQKREHEHAANTAAPAADLPAR
VAAKPAAKPAAGKPRATTGKRPAATHTKQ
>Mature_269_residues
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSIGFLSQVERNLTGISLSSLVNVATALNVPLGTLIEQPRQAQPDSRAG
RREPYAVDATSQWYERLSTTFDGSQIHALKVRMMEGYRSEWVAHGGDEFVYVLTGRVCYTIGKKDYPLSPGDSLHFDARK
RHRVANVGDGPAELIAVGTLPLFDDSCAEFGSATMEIRPPARDAGPTPGEPRVSRREPAQKREHEHAANTAAPAADLPAR
VAAKPAAKPAAGKPRATTGKRPAATHTKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29310; Mature: 29310

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSIGFLSQVERNLTGISLSSLVNVATALN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC
VPLGTLIEQPRQAQPDSRAGRREPYAVDATSQWYERLSTTFDGSQIHALKVRMMEGYRSE
CCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
WVAHGGDEFVYVLTGRVCYTIGKKDYPLSPGDSLHFDARKRHRVANVGDGPAELIAVGTL
HHHCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHEEEECCC
PLFDDSCAEFGSATMEIRPPARDAGPTPGEPRVSRREPAQKREHEHAANTAAPAADLPAR
CCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
VAAKPAAKPAAGKPRATTGKRPAATHTKQ
HHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSIGFLSQVERNLTGISLSSLVNVATALN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC
VPLGTLIEQPRQAQPDSRAGRREPYAVDATSQWYERLSTTFDGSQIHALKVRMMEGYRSE
CCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
WVAHGGDEFVYVLTGRVCYTIGKKDYPLSPGDSLHFDARKRHRVANVGDGPAELIAVGTL
HHHCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHEEEECCC
PLFDDSCAEFGSATMEIRPPARDAGPTPGEPRVSRREPAQKREHEHAANTAAPAADLPAR
CCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
VAAKPAAKPAAGKPRATTGKRPAATHTKQ
HHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA