The gene/protein map for NC_008390 is currently unavailable.
Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115353014

Identifier: 115353014

GI number: 115353014

Start: 3266249

End: 3267622

Strand: Direct

Name: 115353014

Synonym: Bamb_2963

Alternate gene names: NA

Gene position: 3266249-3267622 (Clockwise)

Preceding gene: 115353013

Following gene: 115353015

Centisome position: 91.84

GC content: 69.8

Gene sequence:

>1374_bases
ATGGGTGTGACGTGCGATCGTGATGTGCCGTTGCGATGTACGTCATGCACGATCCGCCACGACTGCCCCAACCCTGTTCC
GTTTTCGCCGATGCCGCCTGCCGACACCCGTCCTCGTCACGTCCTGCCCCGCCACTGGCTGCGCGCGGGCATCGCGATCG
TCGTCGTGCTGGTGCTGCACGCGCTCGCCGCATTGTGGCTCACGCGCAACCGCGAATCGTTCACGCCGCCCGCACCCGCC
GAGATCCCGGTGCAGATCGAATTGCTGAAGCCGCAGCCGATCGAGCGCCAGCCCGCGCCGAAGCCGGTCGAACCTCCAGC
CGAACATCATGCCGAGCCTGCGCCGGCGAAGCCGGCTCCCGCCGCACCGAAGCTCGCGCCGTCGCCCGAGCCCGTGCTGA
CGTCGACGCAGACGGCCGAGCACGGCGAGCCGCCGCCGGCCGCCGCCTCCGCCGCGAGCGGCACGGCAGGCGCATCGGGC
GCGAATGCGGCACCGGCCGACGGCGCCAGCAGTGCCGCCACGCCGGGCCCCGCGACGAGCGGCGTGAAGTTCGTGGCGCC
GTCATCCGGCGATCTGCAATACGATACGTTCTACAACGGGATGCAGAACATGATCGGCACGATCCACTGGCGCACCGACG
GACACACCTACGACCTGTCGGTGTCGATGCCCGTGCCGTTCGTCGGTCCGTTCACGTACCGCAGCGAAGGCCGCATCGAC
GCGTTCGGTGTGGCCCCCGACCGATATGTCGAGAAACGCGGCAAGCGCCCCGAGGACATCGCGATCTTCAACCGCGAGAT
TCGTCAGGTCGTCTTCACGCGCACGCCGAACAACGCGCCGCTGCCCGACGGCGTGCAGGATCGCTTCAGCATGCTGATGC
AGTTGTCGGGGCTCGTGCGCGGCAATCCGTCCGCGTACAAGCCGGGCGTCACGCAACAGTTCTTCGTGATCGACAACAAC
AGCGGCGAGACCTGGCCGATCACGGTGATCGGCGACGAGGACGTGCAGACGCAAACGGGCATCGTGCGCGCGCGCCACTT
CATGCGGTTGCCGCGCCGCGCCGGCGACACGCGCCGCATCGACATGTGGCTCGCGCCGTCGCTCGACTGGTTGCCCGCAA
GGCTCGTACAATCGGAACCGAACGGTGCGCAGATCGAATTGCTTTGGCATGGCCGGCTTGCGCCGCCGGACGCACCGGCC
GACGGGGTGACGCCACGCGCAACAAATGCGCCCGACAGCGCGCCCGCCAGTACCCCGGCCACCGTGGCACCCGCCGCGGA
GCCGGCACAACCGCCACAACCCGCGCCGCCGGCGGACGTGCAACCGTCGGCGCCCACGGGTTCACCGCCTGCGTCGACGC
CGCCCGCGCCGTGA

Upstream 100 bases:

>100_bases
GCTATAGTCCGGACGCGCGCGACGCCTGACACGCGACGCGCGCGACACCCGGACGAATGCGCGCGATGCAGCGCGAACGC
GCGGCGCGGCCGGCGGTCCG

Downstream 100 bases:

>100_bases
TGACCAACAGATCGGCAATTTCGACCGATTAAAGTTGTTGGCCGAAAATGGCCGATGACACTCTTTAACAACTATTTCAG
TGCACCGGATCACAATAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: Proline-Rich Signal Peptide Protein; Prolin-Rich Protein

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MGVTCDRDVPLRCTSCTIRHDCPNPVPFSPMPPADTRPRHVLPRHWLRAGIAIVVVLVLHALAALWLTRNRESFTPPAPA
EIPVQIELLKPQPIERQPAPKPVEPPAEHHAEPAPAKPAPAAPKLAPSPEPVLTSTQTAEHGEPPPAAASAASGTAGASG
ANAAPADGASSAATPGPATSGVKFVAPSSGDLQYDTFYNGMQNMIGTIHWRTDGHTYDLSVSMPVPFVGPFTYRSEGRID
AFGVAPDRYVEKRGKRPEDIAIFNREIRQVVFTRTPNNAPLPDGVQDRFSMLMQLSGLVRGNPSAYKPGVTQQFFVIDNN
SGETWPITVIGDEDVQTQTGIVRARHFMRLPRRAGDTRRIDMWLAPSLDWLPARLVQSEPNGAQIELLWHGRLAPPDAPA
DGVTPRATNAPDSAPASTPATVAPAAEPAQPPQPAPPADVQPSAPTGSPPASTPPAP

Sequences:

>Translated_457_residues
MGVTCDRDVPLRCTSCTIRHDCPNPVPFSPMPPADTRPRHVLPRHWLRAGIAIVVVLVLHALAALWLTRNRESFTPPAPA
EIPVQIELLKPQPIERQPAPKPVEPPAEHHAEPAPAKPAPAAPKLAPSPEPVLTSTQTAEHGEPPPAAASAASGTAGASG
ANAAPADGASSAATPGPATSGVKFVAPSSGDLQYDTFYNGMQNMIGTIHWRTDGHTYDLSVSMPVPFVGPFTYRSEGRID
AFGVAPDRYVEKRGKRPEDIAIFNREIRQVVFTRTPNNAPLPDGVQDRFSMLMQLSGLVRGNPSAYKPGVTQQFFVIDNN
SGETWPITVIGDEDVQTQTGIVRARHFMRLPRRAGDTRRIDMWLAPSLDWLPARLVQSEPNGAQIELLWHGRLAPPDAPA
DGVTPRATNAPDSAPASTPATVAPAAEPAQPPQPAPPADVQPSAPTGSPPASTPPAP
>Mature_456_residues
GVTCDRDVPLRCTSCTIRHDCPNPVPFSPMPPADTRPRHVLPRHWLRAGIAIVVVLVLHALAALWLTRNRESFTPPAPAE
IPVQIELLKPQPIERQPAPKPVEPPAEHHAEPAPAKPAPAAPKLAPSPEPVLTSTQTAEHGEPPPAAASAASGTAGASGA
NAAPADGASSAATPGPATSGVKFVAPSSGDLQYDTFYNGMQNMIGTIHWRTDGHTYDLSVSMPVPFVGPFTYRSEGRIDA
FGVAPDRYVEKRGKRPEDIAIFNREIRQVVFTRTPNNAPLPDGVQDRFSMLMQLSGLVRGNPSAYKPGVTQQFFVIDNNS
GETWPITVIGDEDVQTQTGIVRARHFMRLPRRAGDTRRIDMWLAPSLDWLPARLVQSEPNGAQIELLWHGRLAPPDAPAD
GVTPRATNAPDSAPASTPATVAPAAEPAQPPQPAPPADVQPSAPTGSPPASTPPAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48611; Mature: 48480

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVTCDRDVPLRCTSCTIRHDCPNPVPFSPMPPADTRPRHVLPRHWLRAGIAIVVVLVLH
CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ALAALWLTRNRESFTPPAPAEIPVQIELLKPQPIERQPAPKPVEPPAEHHAEPAPAKPAP
HHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
AAPKLAPSPEPVLTSTQTAEHGEPPPAAASAASGTAGASGANAAPADGASSAATPGPATS
CCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GVKFVAPSSGDLQYDTFYNGMQNMIGTIHWRTDGHTYDLSVSMPVPFVGPFTYRSEGRID
CEEEECCCCCCEEHHHHHHHHHHHHEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCEE
AFGVAPDRYVEKRGKRPEDIAIFNREIRQVVFTRTPNNAPLPDGVQDRFSMLMQLSGLVR
EECCCHHHHHHHHCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
GNPSAYKPGVTQQFFVIDNNSGETWPITVIGDEDVQTQTGIVRARHFMRLPRRAGDTRRI
CCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
DMWLAPSLDWLPARLVQSEPNGAQIELLWHGRLAPPDAPADGVTPRATNAPDSAPASTPA
EEEECCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TVAPAAEPAQPPQPAPPADVQPSAPTGSPPASTPPAP
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GVTCDRDVPLRCTSCTIRHDCPNPVPFSPMPPADTRPRHVLPRHWLRAGIAIVVVLVLH
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ALAALWLTRNRESFTPPAPAEIPVQIELLKPQPIERQPAPKPVEPPAEHHAEPAPAKPAP
HHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
AAPKLAPSPEPVLTSTQTAEHGEPPPAAASAASGTAGASGANAAPADGASSAATPGPATS
CCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GVKFVAPSSGDLQYDTFYNGMQNMIGTIHWRTDGHTYDLSVSMPVPFVGPFTYRSEGRID
CEEEECCCCCCEEHHHHHHHHHHHHEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCEE
AFGVAPDRYVEKRGKRPEDIAIFNREIRQVVFTRTPNNAPLPDGVQDRFSMLMQLSGLVR
EECCCHHHHHHHHCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
GNPSAYKPGVTQQFFVIDNNSGETWPITVIGDEDVQTQTGIVRARHFMRLPRRAGDTRRI
CCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
DMWLAPSLDWLPARLVQSEPNGAQIELLWHGRLAPPDAPADGVTPRATNAPDSAPASTPA
EEEECCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TVAPAAEPAQPPQPAPPADVQPSAPTGSPPASTPPAP
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA