| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is chb [H]
Identifier: 115352931
GI number: 115352931
Start: 3173679
End: 3176162
Strand: Direct
Name: chb [H]
Synonym: Bamb_2880
Alternate gene names: 115352931
Gene position: 3173679-3176162 (Clockwise)
Preceding gene: 115352930
Following gene: 115352940
Centisome position: 89.23
GC content: 70.81
Gene sequence:
>2484_bases ATGAAGAGCACGTTGCCCTCCCTGCTGACCGGCTTGCTGATCGCGGCGCTGTTGCCGGCCGCGACCTGCGCCGCGCCGGT GCAAACCGCCGCCGGCGCGATCGCCGGCACCGCCCGGGCGGCCATGCAGCCGGCCGATCTCGCGGCATTGCTGTCGAACG GCCTCGCGTTGCGCGTGTCCGTGGACAACAACCACGCGGCCGCGGCCGGCGTGCCGTGTGCGGACCTCGGCGCCGACGGC GCGGCCTGCGCGACGGGCCGCCTGTTTCTGCAAAACCGCGGCCACCAGCCGATCGCCGACGGCGGCTGGAAGCTCTACCT GCACAGCATCCGCCGCCTGCTGCGCATCGATCATCCGGGCTTCGCGCTGCGCCGGCTCACCGGCGACCTGTACGAGCTGA CACCGCAGCCGGGATCGGTACGGCTCGCGCCCGGCGAACGCATCGAGCTGCCGTTCGTCGCCGAATACTGGGTGCGGCGC TACAGCGACGTGATTCCGCGGCCGTACGTCGTCGTCGACGGCGCATCGCCTGCGGTGCTCCGCTACAACGACACCGACAA CGAGCTTCGCTACGTCGAATCGCTGCCGGCCGACGCGCAGAACAACTCGACGGGCAACGCGCCGGCCGTCGCCGCGCGGC CCGACGCGAGCCGCGCACTGCCGAGCGTGAAGCGCGAGCAGCCGCTGCCCGGCGCGCTCGATCTACGCGGCGTCGAGCTC TTGCTGGCCGGCCTGCCCGACGCGCAGGTCGCGGCGCTGCGCGAGCGCGCGACGACGCTCGGTCTCGACGGCGCACGCGT GCCGGTGCTCGGCGCGGTCGCACCGCGCCGGCTGCCGGCCGACATCGCGACGCCGGGCGGCTACCGGCTCGCGATCGGGC CGCGCGGCGTCCTCATCGAAGGCTACGATCGCGCCGGCCTCTACTATGGCGTGCAGACGCTGTTCTCGCTCGCGCCGGCC GGCGGCGGCACGATCCCGGCGCTGCTCATCGAGGATGCGCCGCGCTTCACGCATCGCGGGATGCACGTCGATCTCGCGCG CAACTTCAAGCAGCCGGCGACGCTGCGCCGCCTGATCGACCAGATGAGTGCATACAAGCTCAATCGCCTGCACCTGCACC TGTCCGACGACGAAGGCTGGCGCATCGAGATTCCCGGCCTGCCCGAGCTGACCGACATCGGCGCGCGCCGCTGCCACGAC CCGAGCGAGACGCGCTGCCTGCTGCCGCAACTCGGCTCCGGCCCCGACAATCGCTCGGGCGGCGGCTACCTGACGCGCGC CGACTACGTCGCGCTCGTGCGCTATGCGGCCGACCGCTTCATCGACGTGATTCCCGAAATCGACATGCCCGCGCACGCGC GCGCGGCCGTGGTGTCGATGGAGGCGCGCTACCGCCGGCTGCATGCGGCCGGCCGCGACCAGGACGCGAACGCGTATCGG CTGCTCGATCCGCAGGACACGTCGAACCTGACGACGGTGCAGTTCTACGACCGGCGCAGCGACCTGAACCCGTGCGTGCC GGGCGCGCTCAACTTCGCGTCGAAGGTAATCCGCGAGATCGCGGCGATGCATGCGGACGCGCAGGCGCCGCTGCGCATCT GGCACTACGGCGGCGACGAAGCGAAGAACATCCTGCTCGGCGGCGGCTTCCAGCCGTTGAACGGCACCGATCCGAACAAG GGGCGCATCGACCTCGCCGCGCAGGACAAGCCGTGGGCGCGCTCGCCCGCGTGCACGGCGCTGCTCCAGCGCGGCGAGAT CAAGTCGATCGACGAGCTGCCGACGCGCTTCGCGAAACAGGTGAGCGCAGCGGTCGACGCGAACGGGATCGGCACGATGG CCGCGTGGCAGGACGGCATCAAGCACGCGAACGGGCCGCAGGACTTCAGCACGCGGCATGTGATGGTGTCGCTGTGGGAC ACGATCTTCTGGGGCGCGTCGGACAGCGCGCGCGACCTGAGCGGCAAGGGCTACCAGACGGTGCTGGCGCTGCCCGATTA CCTGTACTTCGACTTCCCGTACACGCTGAACCCGCGCGAGCGCGGCTATTACTGGGGCTCGCAGGCAACCGACGAGTACA AGGTGTTCTCGCTCGCGCCGGAGAACCTGCCGCAGAACGCCGAAGTGATGGGCGATCGCGACGGCAACGCGTTCGAGGTG ACCGGCACGGGCCCCGCGCCGCGCATCGAAGGTATTCAGGGGCAGGCCTGGGGCGAGGTGATGCGCAACGACACGTTCCT CGAGTACATGGTGTATCCGCGCCTGCTCGCGCTCGCCGAACGCGCGTGGCACCGCGCCGACTGGGAGCTGCCGTACACGG CCGGCGTGCGCTACAAGCGCGGCGACACGCACCGCGTCGACACGGCCGCGCTGCAGCGCGACTGGGCCGGTTTCGCGACG CTGGTCACGCAGCGCGAATTGCCGAAGCTCGACCGTGCCGGCATTGGCTATCGGAAGCCGACCTTCACGCTGATGAATCC GTGA
Upstream 100 bases:
>100_bases CGCCGGGCGCTGGTGTCCCCGCAGCTCCGTTGAAAGACCCGACCGCGGCGACGTCGTCCCACGACGCCGCGACGCCCCCC CTTTTTTCTCAGGAGTTCGA
Downstream 100 bases:
>100_bases ATGGTAGAGCGGCTGTGCGGTCGAGCGGCTGACCGGCTGACCGGCTGACCGCCGACCGCTGACCGCCGACCGCTGACCGC TGACCGCCGACCGCCGACCG
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MKSTLPSLLTGLLIAALLPAATCAAPVQTAAGAIAGTARAAMQPADLAALLSNGLALRVSVDNNHAAAAGVPCADLGADG AACATGRLFLQNRGHQPIADGGWKLYLHSIRRLLRIDHPGFALRRLTGDLYELTPQPGSVRLAPGERIELPFVAEYWVRR YSDVIPRPYVVVDGASPAVLRYNDTDNELRYVESLPADAQNNSTGNAPAVAARPDASRALPSVKREQPLPGALDLRGVEL LLAGLPDAQVAALRERATTLGLDGARVPVLGAVAPRRLPADIATPGGYRLAIGPRGVLIEGYDRAGLYYGVQTLFSLAPA GGGTIPALLIEDAPRFTHRGMHVDLARNFKQPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDIGARRCHD PSETRCLLPQLGSGPDNRSGGGYLTRADYVALVRYAADRFIDVIPEIDMPAHARAAVVSMEARYRRLHAAGRDQDANAYR LLDPQDTSNLTTVQFYDRRSDLNPCVPGALNFASKVIREIAAMHADAQAPLRIWHYGGDEAKNILLGGGFQPLNGTDPNK GRIDLAAQDKPWARSPACTALLQRGEIKSIDELPTRFAKQVSAAVDANGIGTMAAWQDGIKHANGPQDFSTRHVMVSLWD TIFWGASDSARDLSGKGYQTVLALPDYLYFDFPYTLNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVMGDRDGNAFEV TGTGPAPRIEGIQGQAWGEVMRNDTFLEYMVYPRLLALAERAWHRADWELPYTAGVRYKRGDTHRVDTAALQRDWAGFAT LVTQRELPKLDRAGIGYRKPTFTLMNP
Sequences:
>Translated_827_residues MKSTLPSLLTGLLIAALLPAATCAAPVQTAAGAIAGTARAAMQPADLAALLSNGLALRVSVDNNHAAAAGVPCADLGADG AACATGRLFLQNRGHQPIADGGWKLYLHSIRRLLRIDHPGFALRRLTGDLYELTPQPGSVRLAPGERIELPFVAEYWVRR YSDVIPRPYVVVDGASPAVLRYNDTDNELRYVESLPADAQNNSTGNAPAVAARPDASRALPSVKREQPLPGALDLRGVEL LLAGLPDAQVAALRERATTLGLDGARVPVLGAVAPRRLPADIATPGGYRLAIGPRGVLIEGYDRAGLYYGVQTLFSLAPA GGGTIPALLIEDAPRFTHRGMHVDLARNFKQPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDIGARRCHD PSETRCLLPQLGSGPDNRSGGGYLTRADYVALVRYAADRFIDVIPEIDMPAHARAAVVSMEARYRRLHAAGRDQDANAYR LLDPQDTSNLTTVQFYDRRSDLNPCVPGALNFASKVIREIAAMHADAQAPLRIWHYGGDEAKNILLGGGFQPLNGTDPNK GRIDLAAQDKPWARSPACTALLQRGEIKSIDELPTRFAKQVSAAVDANGIGTMAAWQDGIKHANGPQDFSTRHVMVSLWD TIFWGASDSARDLSGKGYQTVLALPDYLYFDFPYTLNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVMGDRDGNAFEV TGTGPAPRIEGIQGQAWGEVMRNDTFLEYMVYPRLLALAERAWHRADWELPYTAGVRYKRGDTHRVDTAALQRDWAGFAT LVTQRELPKLDRAGIGYRKPTFTLMNP >Mature_827_residues MKSTLPSLLTGLLIAALLPAATCAAPVQTAAGAIAGTARAAMQPADLAALLSNGLALRVSVDNNHAAAAGVPCADLGADG AACATGRLFLQNRGHQPIADGGWKLYLHSIRRLLRIDHPGFALRRLTGDLYELTPQPGSVRLAPGERIELPFVAEYWVRR YSDVIPRPYVVVDGASPAVLRYNDTDNELRYVESLPADAQNNSTGNAPAVAARPDASRALPSVKREQPLPGALDLRGVEL LLAGLPDAQVAALRERATTLGLDGARVPVLGAVAPRRLPADIATPGGYRLAIGPRGVLIEGYDRAGLYYGVQTLFSLAPA GGGTIPALLIEDAPRFTHRGMHVDLARNFKQPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDIGARRCHD PSETRCLLPQLGSGPDNRSGGGYLTRADYVALVRYAADRFIDVIPEIDMPAHARAAVVSMEARYRRLHAAGRDQDANAYR LLDPQDTSNLTTVQFYDRRSDLNPCVPGALNFASKVIREIAAMHADAQAPLRIWHYGGDEAKNILLGGGFQPLNGTDPNK GRIDLAAQDKPWARSPACTALLQRGEIKSIDELPTRFAKQVSAAVDANGIGTMAAWQDGIKHANGPQDFSTRHVMVSLWD TIFWGASDSARDLSGKGYQTVLALPDYLYFDFPYTLNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVMGDRDGNAFEV TGTGPAPRIEGIQGQAWGEVMRNDTFLEYMVYPRLLALAERAWHRADWELPYTAGVRYKRGDTHRVDTAALQRDWAGFAT LVTQRELPKLDRAGIGYRKPTFTLMNP
Specific function: Digests the beta-1,4-glycosidic bonds in N- acetylglucosamine (GlcNAc) oligomers (mainly dimers) [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Drosophila melanogaster, GI17933586, Length=542, Percent_Identity=23.9852398523985, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 90079; Mature: 90079
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSTLPSLLTGLLIAALLPAATCAAPVQTAAGAIAGTARAAMQPADLAALLSNGLALRVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEE VDNNHAAAAGVPCADLGADGAACATGRLFLQNRGHQPIADGGWKLYLHSIRRLLRIDHPG ECCCCCCCCCCCHHHCCCCCCHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC FALRRLTGDLYELTPQPGSVRLAPGERIELPFVAEYWVRRYSDVIPRPYVVVDGASPAVL HHHHHHCCHHHEECCCCCCEEECCCCEECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEE RYNDTDNELRYVESLPADAQNNSTGNAPAVAARPDASRALPSVKREQPLPGALDLRGVEL EECCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHCCCCHHHCCCCCCCCCCCCHHH LLAGLPDAQVAALRERATTLGLDGARVPVLGAVAPRRLPADIATPGGYRLAIGPRGVLIE EEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCEEEEE GYDRAGLYYGVQTLFSLAPAGGGTIPALLIEDAPRFTHRGMHVDLARNFKQPATLRRLID CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCEEEEHHHCCCCHHHHHHHHH QMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDIGARRCHDPSETRCLLPQLGSGPDNRSG HHHHCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCC GGYLTRADYVALVRYAADRFIDVIPEIDMPAHARAAVVSMEARYRRLHAAGRDQDANAYR CCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE LLDPQDTSNLTTVQFYDRRSDLNPCVPGALNFASKVIREIAAMHADAQAPLRIWHYGGDE EECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC AKNILLGGGFQPLNGTDPNKGRIDLAAQDKPWARSPACTALLQRGEIKSIDELPTRFAKQ CCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH VSAAVDANGIGTMAAWQDGIKHANGPQDFSTRHVMVSLWDTIFWGASDSARDLSGKGYQT HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE VLALPDYLYFDFPYTLNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVMGDRDGNAFEV EEECCCEEEEECCEEECCCCCCEECCCCCCCCEEEEEECCCCCCCCCCEECCCCCCEEEE TGTGPAPRIEGIQGQAWGEVMRNDTFLEYMVYPRLLALAERAWHRADWELPYTAGVRYKR ECCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEECC GDTHRVDTAALQRDWAGFATLVTQRELPKLDRAGIGYRKPTFTLMNP CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEECCC >Mature Secondary Structure MKSTLPSLLTGLLIAALLPAATCAAPVQTAAGAIAGTARAAMQPADLAALLSNGLALRVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEE VDNNHAAAAGVPCADLGADGAACATGRLFLQNRGHQPIADGGWKLYLHSIRRLLRIDHPG ECCCCCCCCCCCHHHCCCCCCHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC FALRRLTGDLYELTPQPGSVRLAPGERIELPFVAEYWVRRYSDVIPRPYVVVDGASPAVL HHHHHHCCHHHEECCCCCCEEECCCCEECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEE RYNDTDNELRYVESLPADAQNNSTGNAPAVAARPDASRALPSVKREQPLPGALDLRGVEL EECCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHCCCCHHHCCCCCCCCCCCCHHH LLAGLPDAQVAALRERATTLGLDGARVPVLGAVAPRRLPADIATPGGYRLAIGPRGVLIE EEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCEEEEE GYDRAGLYYGVQTLFSLAPAGGGTIPALLIEDAPRFTHRGMHVDLARNFKQPATLRRLID CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCEEEEHHHCCCCHHHHHHHHH QMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDIGARRCHDPSETRCLLPQLGSGPDNRSG HHHHCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCC GGYLTRADYVALVRYAADRFIDVIPEIDMPAHARAAVVSMEARYRRLHAAGRDQDANAYR CCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE LLDPQDTSNLTTVQFYDRRSDLNPCVPGALNFASKVIREIAAMHADAQAPLRIWHYGGDE EECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC AKNILLGGGFQPLNGTDPNKGRIDLAAQDKPWARSPACTALLQRGEIKSIDELPTRFAKQ CCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH VSAAVDANGIGTMAAWQDGIKHANGPQDFSTRHVMVSLWDTIFWGASDSARDLSGKGYQT HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE VLALPDYLYFDFPYTLNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVMGDRDGNAFEV EEECCCEEEEECCEEECCCCCCEECCCCCCCCEEEEEECCCCCCCCCCEECCCCCCEEEE TGTGPAPRIEGIQGQAWGEVMRNDTFLEYMVYPRLLALAERAWHRADWELPYTAGVRYKR ECCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEECC GDTHRVDTAALQRDWAGFATLVTQRELPKLDRAGIGYRKPTFTLMNP CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8621090; 8673609 [H]