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The map label for this gene is pcl [H]

Identifier: 115352864

GI number: 115352864

Start: 3102660

End: 3104489

Strand: Direct

Name: pcl [H]

Synonym: Bamb_2813

Alternate gene names: 115352864

Gene position: 3102660-3104489 (Clockwise)

Preceding gene: 115352863

Following gene: 115352865

Centisome position: 87.24

GC content: 72.02

Gene sequence:

>1830_bases
ATGAATTCATGGCCGGCGCGGCGCCGCATCGCGGCCGCGCCGGTCACCGCTTCCCGCTCTAGCCGATTTATGCCGACTCA
CCCGCTGGTATTCCATTCGTCGCCGGACCAGACGATCGCCTGGCGCGACGGCGCGCCCGTCACCGTGCGCGCGTTCGTCG
CCGACGTCGCGCGCGTGGCCGCCGCGCTGCCCGCCGGCGGCCACGTGTTCAACGTGTGCCGCGACCGCTACCGCTTCGCG
GTCAGCCTGTGCGCGGCGCTTGTGTCCGGCAGGATCAGCCTGCTGCCGTCGACGCATACGCCGGAGATGGTGCGCCAGCT
CGCGTCGTTCGCACCTGACGCGTTCTGCCTGCACGACGCGCCCGACTGCACGATCGACCTGCCGCGCTTCGCGTATCCGG
ACGCCTCCGCCGGCGACCTCCGCGACGACACACCCTGCATGGTGCCGCGGATCGACGCAGCGCGGATCATGGCGTACGTG
TTCACCTCCGGCTCGACCGGCGCGCCGGTGCCGCACCGCAAGACCTGGGGCTTCCTGGTCGGCTGCGTGCGCGCGGCGGC
CGACCGCCTCGGCCTGCTCGACGGCCGCGCGGCCACGCTGATCGGCACCGTGCCCGCGCAGCACATGTACGGCTTCGAGT
CGACGGTGTTGCTCGCGCTGATCGGCGGCCTCGCGTTCAGCAATCGCCAGCCGTTCTATCCGCGCGACATTCGCGACGAA
CTCGACGCGATCCCGCAGCCGCGCGTGCTCGTCACGTCGCCGATCCACCTGCGCGCGCTGCTGTCGGCCGGCCATGCGCT
GCCGCCGGCCGCGCTCGTGCTGTCGGCCACCGCGCCGCTGTCGGAAAAACTCGCGTGCGAAGCCGAGGCCGCGCTCGGCG
CGCCGCTCGTCGAAATCTACGGCAGCACCGAGACCGGGCAGATCGCGACGCGCCGCACGTCGCAGGGCGCGACCTGGCAA
GTGTTCCCGGGCATCCGGCTCGATGCGCGTGATGCGCATGACGCGTCGCACGGCGAGGCCGCGGCCGACGACAGTGGCCC
GACCATGTGGGTATCGGGCGGACACGTCGAGGCCCCCGTGCCGATGGGCGACGCGCTCGAGCTGCTCGGCGACGGCCGGT
TCCTGCTGCATGGCCGCAAGGCGGACCTCGTCAACATCGCCGGCAAGCGCACGTCGCTCGCCTATCTGAATCATCAATTG
AACGCGATTGCCGGCGTCGTCGACGGCGTGTTCTTCATGCCGGACGAAGCCGCGCCGGCCCACGCCGATGCGACCCGCGA
ACCGGTCACGCGCCTCGTCGCGCTCGTGGTCGCCCCGACGCTCGCCGCGGCCGATCTGCAGCGCGCGCTGCGCGAACGGA
TCGATCCCGCGTTCATGCCGCGTCCGCTCGTGTTCGTCGATACGTTGCCGCGCAACGAAACGGGCAAGCTGCCGCGCGAC
GTGCTCGCCGCGCTCGTCGCACGGCACACGCGCGCCGCCACGGCCGACGTGCGCGATCGCAGCGAGACGGATGCGCCGCT
CGCGTTCACGATTCCCGCCGATCACCCTGCGCTGCCCGGTCATTTCCCCGGTCATCCGATCGTGCCGGGCGTCGTGCTGC
TCGATCACGCGATCGCCGCGCTCGGCGCATCGCTGAACCGCCCGCTGGATACGTGGCGGCTCGCTTCCGCGAAATTCCTG
AGCCCGGTCGCGCCCGGCGAACCGCTCGATCTCGCGTTCGATGCGGCGGCAGGCGGTGCAATCCGCTTCACGCTGCGCGC
CGGCACGCGCGACGTCGCGACCGGCGTGCTGTCCGCGCCGCCAGCCGCACCGGAAGGCGCGCAGCCATGA

Upstream 100 bases:

>100_bases
CCGCCGAGCATGCGTGCCGGCGCTTCGCGCTGCCGCACGATGCTCGGGCGCGGATGGTCGACGCGGTGCGCGCGTACCGC
GCGTCGACGCAACCGTCACG

Downstream 100 bases:

>100_bases
AGCGCACCGCATGGGCCGAGCGCCAGGAACGCAGCAACGCGGCGCTGCTGCGCGCGATGGCCTGGATCTCGCTGCGGTTC
GGCCGGCGGCCGTCGCGCGT

Product: Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase-like protein

Products: NA

Alternate protein names: 4CL; 4-coumaroyl-CoA synthase [H]

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MNSWPARRRIAAAPVTASRSSRFMPTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVAAALPAGGHVFNVCRDRYRFA
VSLCAALVSGRISLLPSTHTPEMVRQLASFAPDAFCLHDAPDCTIDLPRFAYPDASAGDLRDDTPCMVPRIDAARIMAYV
FTSGSTGAPVPHRKTWGFLVGCVRAAADRLGLLDGRAATLIGTVPAQHMYGFESTVLLALIGGLAFSNRQPFYPRDIRDE
LDAIPQPRVLVTSPIHLRALLSAGHALPPAALVLSATAPLSEKLACEAEAALGAPLVEIYGSTETGQIATRRTSQGATWQ
VFPGIRLDARDAHDASHGEAAADDSGPTMWVSGGHVEAPVPMGDALELLGDGRFLLHGRKADLVNIAGKRTSLAYLNHQL
NAIAGVVDGVFFMPDEAAPAHADATREPVTRLVALVVAPTLAAADLQRALRERIDPAFMPRPLVFVDTLPRNETGKLPRD
VLAALVARHTRAATADVRDRSETDAPLAFTIPADHPALPGHFPGHPIVPGVVLLDHAIAALGASLNRPLDTWRLASAKFL
SPVAPGEPLDLAFDAAAGGAIRFTLRAGTRDVATGVLSAPPAAPEGAQP

Sequences:

>Translated_609_residues
MNSWPARRRIAAAPVTASRSSRFMPTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVAAALPAGGHVFNVCRDRYRFA
VSLCAALVSGRISLLPSTHTPEMVRQLASFAPDAFCLHDAPDCTIDLPRFAYPDASAGDLRDDTPCMVPRIDAARIMAYV
FTSGSTGAPVPHRKTWGFLVGCVRAAADRLGLLDGRAATLIGTVPAQHMYGFESTVLLALIGGLAFSNRQPFYPRDIRDE
LDAIPQPRVLVTSPIHLRALLSAGHALPPAALVLSATAPLSEKLACEAEAALGAPLVEIYGSTETGQIATRRTSQGATWQ
VFPGIRLDARDAHDASHGEAAADDSGPTMWVSGGHVEAPVPMGDALELLGDGRFLLHGRKADLVNIAGKRTSLAYLNHQL
NAIAGVVDGVFFMPDEAAPAHADATREPVTRLVALVVAPTLAAADLQRALRERIDPAFMPRPLVFVDTLPRNETGKLPRD
VLAALVARHTRAATADVRDRSETDAPLAFTIPADHPALPGHFPGHPIVPGVVLLDHAIAALGASLNRPLDTWRLASAKFL
SPVAPGEPLDLAFDAAAGGAIRFTLRAGTRDVATGVLSAPPAAPEGAQP
>Mature_609_residues
MNSWPARRRIAAAPVTASRSSRFMPTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVAAALPAGGHVFNVCRDRYRFA
VSLCAALVSGRISLLPSTHTPEMVRQLASFAPDAFCLHDAPDCTIDLPRFAYPDASAGDLRDDTPCMVPRIDAARIMAYV
FTSGSTGAPVPHRKTWGFLVGCVRAAADRLGLLDGRAATLIGTVPAQHMYGFESTVLLALIGGLAFSNRQPFYPRDIRDE
LDAIPQPRVLVTSPIHLRALLSAGHALPPAALVLSATAPLSEKLACEAEAALGAPLVEIYGSTETGQIATRRTSQGATWQ
VFPGIRLDARDAHDASHGEAAADDSGPTMWVSGGHVEAPVPMGDALELLGDGRFLLHGRKADLVNIAGKRTSLAYLNHQL
NAIAGVVDGVFFMPDEAAPAHADATREPVTRLVALVVAPTLAAADLQRALRERIDPAFMPRPLVFVDTLPRNETGKLPRD
VLAALVARHTRAATADVRDRSETDAPLAFTIPADHPALPGHFPGHPIVPGVVLLDHAIAALGASLNRPLDTWRLASAKFL
SPVAPGEPLDLAFDAAAGGAIRFTLRAGTRDVATGVLSAPPAAPEGAQP

Specific function: Converts p-coumaric acid into p-coumaryl CoA. This is necessary for the activation of the photoactive yellow protein (PYP) chromophore [H]

COG id: COG0365

COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012743
- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.12 [H]

Molecular weight: Translated: 64350; Mature: 64350

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSWPARRRIAAAPVTASRSSRFMPTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVA
CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEHHHHHHHHHHHH
AALPAGGHVFNVCRDRYRFAVSLCAALVSGRISLLPSTHTPEMVRQLASFAPDAFCLHDA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCEEECCC
PDCTIDLPRFAYPDASAGDLRDDTPCMVPRIDAARIMAYVFTSGSTGAPVPHRKTWGFLV
CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCHHHHHH
GCVRAAADRLGLLDGRAATLIGTVPAQHMYGFESTVLLALIGGLAFSNRQPFYPRDIRDE
HHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LDAIPQPRVLVTSPIHLRALLSAGHALPPAALVLSATAPLSEKLACEAEAALGAPLVEIY
HHCCCCCCEEEECCHHHHHHHHCCCCCCCHHEEEECCCCCHHHHHHHHHHHCCCCEEEEE
GSTETGQIATRRTSQGATWQVFPGIRLDARDAHDASHGEAAADDSGPTMWVSGGHVEAPV
CCCCCCCEEEEECCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCEEECCC
PMGDALELLGDGRFLLHGRKADLVNIAGKRTSLAYLNHQLNAIAGVVDGVFFMPDEAAPA
CCCHHHHHHCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC
HADATREPVTRLVALVVAPTLAAADLQRALRERIDPAFMPRPLVFVDTLPRNETGKLPRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHH
VLAALVARHTRAATADVRDRSETDAPLAFTIPADHPALPGHFPGHPIVPGVVLLDHAIAA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LGASLNRPLDTWRLASAKFLSPVAPGEPLDLAFDAAAGGAIRFTLRAGTRDVATGVLSAP
HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHCCC
PAAPEGAQP
CCCCCCCCC
>Mature Secondary Structure
MNSWPARRRIAAAPVTASRSSRFMPTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVA
CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEHHHHHHHHHHHH
AALPAGGHVFNVCRDRYRFAVSLCAALVSGRISLLPSTHTPEMVRQLASFAPDAFCLHDA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCEEECCC
PDCTIDLPRFAYPDASAGDLRDDTPCMVPRIDAARIMAYVFTSGSTGAPVPHRKTWGFLV
CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCHHHHHH
GCVRAAADRLGLLDGRAATLIGTVPAQHMYGFESTVLLALIGGLAFSNRQPFYPRDIRDE
HHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LDAIPQPRVLVTSPIHLRALLSAGHALPPAALVLSATAPLSEKLACEAEAALGAPLVEIY
HHCCCCCCEEEECCHHHHHHHHCCCCCCCHHEEEECCCCCHHHHHHHHHHHCCCCEEEEE
GSTETGQIATRRTSQGATWQVFPGIRLDARDAHDASHGEAAADDSGPTMWVSGGHVEAPV
CCCCCCCEEEEECCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCEEECCC
PMGDALELLGDGRFLLHGRKADLVNIAGKRTSLAYLNHQLNAIAGVVDGVFFMPDEAAPA
CCCHHHHHHCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC
HADATREPVTRLVALVVAPTLAAADLQRALRERIDPAFMPRPLVFVDTLPRNETGKLPRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHH
VLAALVARHTRAATADVRDRSETDAPLAFTIPADHPALPGHFPGHPIVPGVVLLDHAIAA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LGASLNRPLDTWRLASAKFLSPVAPGEPLDLAFDAAAGGAIRFTLRAGTRDVATGVLSAP
HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHCCC
PAAPEGAQP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA