| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352847
Identifier: 115352847
GI number: 115352847
Start: 3084771
End: 3085613
Strand: Direct
Name: 115352847
Synonym: Bamb_2796
Alternate gene names: NA
Gene position: 3084771-3085613 (Clockwise)
Preceding gene: 115352844
Following gene: 115352850
Centisome position: 86.74
GC content: 68.09
Gene sequence:
>843_bases ATGGAACCGATTTCAATCACGCCTGCCGCGACGCTGTCGCCGGAGGATCAGGACGCGCTGCGGCGCGCGAAGCAGGTGCT GGAAAGCCCGTCGCTGACGATGAAGCTGACGGGCATGCTGGGCGCGCCGGTCGAGAAGATGATCGCGCGGCTGCCGGACT TCGCGACCGGCAAGATCAACGACGCGACGCAGCTCGCGCTGCGCAAGTGCCTGAACATCGCGCTGCGCACGCTCGGCAAG CCGCAGACGCCCGATGCCGAGCCGGACAAGCCGAGCAACCTGCTGCACAAGCTCGCGGTCGCGACGACCGGCGCGGCGGG CGGCGCATTCGGCTTCCTTGCGCTGCCGGTCGAGTTGCCGGTGACGACGACGCTGATCTTCCGCTCGGTGTGCGACATCG CGCGCAGCGAGGGCGAGGATCTGGGCTCGGTGGATACGCAGCTGCAGTGCCTGGCCGTGCTCGGCATGGGCGGCAACCCG GACAAGGACGAGGAGGACGCCGATCTCGGCTATTTCGTGCTACGCGGCGCGCTCGCGCAGGCGATTTCGAAGGCATCGTC GGACATCACGACGAAAGGGATCGCCGCGCACAGCTCGGCGGCCGTGTTCAAGCTCGTGCAGACGGTCGCGTCACGCTTCT CGGTGCAGGTCACCGAGCAGATGGCCGCGAAGTCGATCCCGGCGATCGGCGCGGTGCTCGGCGCGACCGTCAACACGCTG TTCATCGACCACTTCCAGCAGATGGCGCACGGCCACTTCACCGTGCGCCGGCTCGAGCGCAAGTACGGCTCGGTGGCCGT CAAAGCCGCGTATCAGGCGATCGACGGCTCGCCGACGCGCTGA
Upstream 100 bases:
>100_bases TGATGCAACTTTTGACGAGTCAAACAATCTCAAAATTCTAGCACGCCGGAGTAATCTAGGATGGCGACGGTTCACCCCGC CCCGGCCGCCAAGGAGAAAG
Downstream 100 bases:
>100_bases ACCGCCCGCTCGACCGCGACGCGACGCAGGAACGTGGCCGCCCGGTCGAGCGCGTCGCGCGCCTCCGGCACCATCGGCGC GTACAGCTGCCACACGTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKINDATQLALRKCLNIALRTLGK PQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELPVTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNP DKDEEDADLGYFVLRGALAQAISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR
Sequences:
>Translated_280_residues MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKINDATQLALRKCLNIALRTLGK PQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELPVTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNP DKDEEDADLGYFVLRGALAQAISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR >Mature_280_residues MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKINDATQLALRKCLNIALRTLGK PQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELPVTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNP DKDEEDADLGYFVLRGALAQAISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29554; Mature: 29554
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKIN CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHCCCHHHHHHHCCCCCCCCCC DATQLALRKCLNIALRTLGKPQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELP HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCCCC VTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNPDKDEEDADLGYFVLRGALAQ HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH AISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKIN CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHCCCHHHHHHHCCCCCCCCCC DATQLALRKCLNIALRTLGKPQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELP HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCCCC VTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNPDKDEEDADLGYFVLRGALAQ HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH AISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA