Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352847

Identifier: 115352847

GI number: 115352847

Start: 3084771

End: 3085613

Strand: Direct

Name: 115352847

Synonym: Bamb_2796

Alternate gene names: NA

Gene position: 3084771-3085613 (Clockwise)

Preceding gene: 115352844

Following gene: 115352850

Centisome position: 86.74

GC content: 68.09

Gene sequence:

>843_bases
ATGGAACCGATTTCAATCACGCCTGCCGCGACGCTGTCGCCGGAGGATCAGGACGCGCTGCGGCGCGCGAAGCAGGTGCT
GGAAAGCCCGTCGCTGACGATGAAGCTGACGGGCATGCTGGGCGCGCCGGTCGAGAAGATGATCGCGCGGCTGCCGGACT
TCGCGACCGGCAAGATCAACGACGCGACGCAGCTCGCGCTGCGCAAGTGCCTGAACATCGCGCTGCGCACGCTCGGCAAG
CCGCAGACGCCCGATGCCGAGCCGGACAAGCCGAGCAACCTGCTGCACAAGCTCGCGGTCGCGACGACCGGCGCGGCGGG
CGGCGCATTCGGCTTCCTTGCGCTGCCGGTCGAGTTGCCGGTGACGACGACGCTGATCTTCCGCTCGGTGTGCGACATCG
CGCGCAGCGAGGGCGAGGATCTGGGCTCGGTGGATACGCAGCTGCAGTGCCTGGCCGTGCTCGGCATGGGCGGCAACCCG
GACAAGGACGAGGAGGACGCCGATCTCGGCTATTTCGTGCTACGCGGCGCGCTCGCGCAGGCGATTTCGAAGGCATCGTC
GGACATCACGACGAAAGGGATCGCCGCGCACAGCTCGGCGGCCGTGTTCAAGCTCGTGCAGACGGTCGCGTCACGCTTCT
CGGTGCAGGTCACCGAGCAGATGGCCGCGAAGTCGATCCCGGCGATCGGCGCGGTGCTCGGCGCGACCGTCAACACGCTG
TTCATCGACCACTTCCAGCAGATGGCGCACGGCCACTTCACCGTGCGCCGGCTCGAGCGCAAGTACGGCTCGGTGGCCGT
CAAAGCCGCGTATCAGGCGATCGACGGCTCGCCGACGCGCTGA

Upstream 100 bases:

>100_bases
TGATGCAACTTTTGACGAGTCAAACAATCTCAAAATTCTAGCACGCCGGAGTAATCTAGGATGGCGACGGTTCACCCCGC
CCCGGCCGCCAAGGAGAAAG

Downstream 100 bases:

>100_bases
ACCGCCCGCTCGACCGCGACGCGACGCAGGAACGTGGCCGCCCGGTCGAGCGCGTCGCGCGCCTCCGGCACCATCGGCGC
GTACAGCTGCCACACGTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKINDATQLALRKCLNIALRTLGK
PQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELPVTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNP
DKDEEDADLGYFVLRGALAQAISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL
FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR

Sequences:

>Translated_280_residues
MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKINDATQLALRKCLNIALRTLGK
PQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELPVTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNP
DKDEEDADLGYFVLRGALAQAISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL
FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR
>Mature_280_residues
MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKINDATQLALRKCLNIALRTLGK
PQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELPVTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNP
DKDEEDADLGYFVLRGALAQAISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL
FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29554; Mature: 29554

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKIN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHCCCHHHHHHHCCCCCCCCCC
DATQLALRKCLNIALRTLGKPQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELP
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCCCC
VTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNPDKDEEDADLGYFVLRGALAQ
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
AISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEPISITPAATLSPEDQDALRRAKQVLESPSLTMKLTGMLGAPVEKMIARLPDFATGKIN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHCCCHHHHHHHCCCCCCCCCC
DATQLALRKCLNIALRTLGKPQTPDAEPDKPSNLLHKLAVATTGAAGGAFGFLALPVELP
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCCCC
VTTTLIFRSVCDIARSEGEDLGSVDTQLQCLAVLGMGGNPDKDEEDADLGYFVLRGALAQ
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
AISKASSDITTKGIAAHSSAAVFKLVQTVASRFSVQVTEQMAAKSIPAIGAVLGATVNTL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FIDHFQQMAHGHFTVRRLERKYGSVAVKAAYQAIDGSPTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA