| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352788
Identifier: 115352788
GI number: 115352788
Start: 3015185
End: 3016219
Strand: Direct
Name: 115352788
Synonym: Bamb_2737
Alternate gene names: NA
Gene position: 3015185-3016219 (Clockwise)
Preceding gene: 115352787
Following gene: 115352789
Centisome position: 84.78
GC content: 69.47
Gene sequence:
>1035_bases ATGGCTGAAGCGATCCTCATCGGCGTAAACCTCGACGGCGTGCTCGAACACGACGGCCTGCCGCTGCCCACGCCGGCCGA GCGGTTCCGGATGATCGCCGGCGCCGGCGCGTTCGACTATGTCGAAAAGAACCCGGTGCGCGGCGAGGATCTCGCGCCGT ACTTCGCGCTGGTCGACCGGCATGCGCTGCCGATTCGCGTGATCGGCGGCATCTGGCGCGCCGGCCGCGACGAAGCGCAT GTCGACGAGATCATCGACGCCGGCGCGCGGTTCGGCAGCACGGTGCTCAACTGCCAGCTGTACGCGCACCACGCGGACGG TCATCCGTTGTCGGACCGCGAAGTCGCCGCCTTCTACCTGCGCGCGTACGAACGCGGCGAGCCGGTCGGCTGCCTGCCGA GCCTCGAAGTGCACGTCGACATGTGGAGCGAGGATTTCCGGCGGGTCGCGCGGGTCGCGCAATGCGTCGAGCGGGCCGGC GCGCCGTTCAGGATCACGCTCGACCATTCGCATCTGCTGTTCAAGATCGGCAATCGCGGCGAACTCGACGCGTCAGGCTT GCACGAGCCGGCCGGCAGCGCGCGCCACTTGCTCGACCCGGCGTCGCCGTCGGCCGTCTACGCCGACTGGATCGCACGCG GCTGGGTCCGGCACGCGCATGCGCGCAGCGTGATCCCGAACAATCCGGAGAACCGCTGGATGCGCCGCGCGGACGGCCGG CCCGGCCGCGGAATCCAGTATCCGTTCGTCGAACCGGCGCCAGGCGTCTATCACGGCGATTGGCATGCGGCGCCGCTCGA CACATGGAAGACGGCGCTGTGGCAGCTGCTGCAGTGGCAGGTCCATGCGCGGCCGACGTTGCTCGAGCAGATCAGCTGCG AGTTCATTCCGTTTCCGGACTACGGCGGCGGCGCCCGCTATTCGATCTTCGACAACAACGTCGCGTGCGCGCAGTGGCTG CGCGACACGTGGCACGCGCTTGCCGCGCAGCCGGCGGATACGCCGGCCGCCGGCTGCGCGCGCAGCTTTACCTGA
Upstream 100 bases:
>100_bases ACCGCCGCATTGGCGATTTTTCGTCAACGTTTGTCATGCGGCGCGCGCGGCATGTCCGTACATTTGGCAGCCATCCAGGG ACCAGGACGGACGGGAGACG
Downstream 100 bases:
>100_bases TTCGCCCGCCCCACCCGAGACCTGAGGACCGAACGATGACGCAACCAGCATTCCATTTTTCGCTGAACCGGATGAGCGCG CCGCGCCTGCCGCTCGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MAEAILIGVNLDGVLEHDGLPLPTPAERFRMIAGAGAFDYVEKNPVRGEDLAPYFALVDRHALPIRVIGGIWRAGRDEAH VDEIIDAGARFGSTVLNCQLYAHHADGHPLSDREVAAFYLRAYERGEPVGCLPSLEVHVDMWSEDFRRVARVAQCVERAG APFRITLDHSHLLFKIGNRGELDASGLHEPAGSARHLLDPASPSAVYADWIARGWVRHAHARSVIPNNPENRWMRRADGR PGRGIQYPFVEPAPGVYHGDWHAAPLDTWKTALWQLLQWQVHARPTLLEQISCEFIPFPDYGGGARYSIFDNNVACAQWL RDTWHALAAQPADTPAAGCARSFT
Sequences:
>Translated_344_residues MAEAILIGVNLDGVLEHDGLPLPTPAERFRMIAGAGAFDYVEKNPVRGEDLAPYFALVDRHALPIRVIGGIWRAGRDEAH VDEIIDAGARFGSTVLNCQLYAHHADGHPLSDREVAAFYLRAYERGEPVGCLPSLEVHVDMWSEDFRRVARVAQCVERAG APFRITLDHSHLLFKIGNRGELDASGLHEPAGSARHLLDPASPSAVYADWIARGWVRHAHARSVIPNNPENRWMRRADGR PGRGIQYPFVEPAPGVYHGDWHAAPLDTWKTALWQLLQWQVHARPTLLEQISCEFIPFPDYGGGARYSIFDNNVACAQWL RDTWHALAAQPADTPAAGCARSFT >Mature_343_residues AEAILIGVNLDGVLEHDGLPLPTPAERFRMIAGAGAFDYVEKNPVRGEDLAPYFALVDRHALPIRVIGGIWRAGRDEAHV DEIIDAGARFGSTVLNCQLYAHHADGHPLSDREVAAFYLRAYERGEPVGCLPSLEVHVDMWSEDFRRVARVAQCVERAGA PFRITLDHSHLLFKIGNRGELDASGLHEPAGSARHLLDPASPSAVYADWIARGWVRHAHARSVIPNNPENRWMRRADGRP GRGIQYPFVEPAPGVYHGDWHAAPLDTWKTALWQLLQWQVHARPTLLEQISCEFIPFPDYGGGARYSIFDNNVACAQWLR DTWHALAAQPADTPAAGCARSFT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38175; Mature: 38044
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEAILIGVNLDGVLEHDGLPLPTPAERFRMIAGAGAFDYVEKNPVRGEDLAPYFALVDR CCCEEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHC HALPIRVIGGIWRAGRDEAHVDEIIDAGARFGSTVLNCQLYAHHADGHPLSDREVAAFYL CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCHHHHHHHH RAYERGEPVGCLPSLEVHVDMWSEDFRRVARVAQCVERAGAPFRITLDHSHLLFKIGNRG HHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCC ELDASGLHEPAGSARHLLDPASPSAVYADWIARGWVRHAHARSVIPNNPENRWMRRADGR CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC PGRGIQYPFVEPAPGVYHGDWHAAPLDTWKTALWQLLQWQVHARPTLLEQISCEFIPFPD CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEECCC YGGGARYSIFDNNVACAQWLRDTWHALAAQPADTPAAGCARSFT CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC >Mature Secondary Structure AEAILIGVNLDGVLEHDGLPLPTPAERFRMIAGAGAFDYVEKNPVRGEDLAPYFALVDR CCEEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHC HALPIRVIGGIWRAGRDEAHVDEIIDAGARFGSTVLNCQLYAHHADGHPLSDREVAAFYL CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCHHHHHHHH RAYERGEPVGCLPSLEVHVDMWSEDFRRVARVAQCVERAGAPFRITLDHSHLLFKIGNRG HHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCC ELDASGLHEPAGSARHLLDPASPSAVYADWIARGWVRHAHARSVIPNNPENRWMRRADGR CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC PGRGIQYPFVEPAPGVYHGDWHAAPLDTWKTALWQLLQWQVHARPTLLEQISCEFIPFPD CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEECCC YGGGARYSIFDNNVACAQWLRDTWHALAAQPADTPAAGCARSFT CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA