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The map label for this gene is yhjC [C]

Identifier: 115352763

GI number: 115352763

Start: 2987964

End: 2988851

Strand: Direct

Name: yhjC [C]

Synonym: Bamb_2712

Alternate gene names: 115352763

Gene position: 2987964-2988851 (Clockwise)

Preceding gene: 115352762

Following gene: 115352764

Centisome position: 84.01

GC content: 63.29

Gene sequence:

>888_bases
ATGGACGAACTCCTGCCAATGCGGCTATTCATCAAGGTAGCCGAACTTCACAGTTTCGCGCGTGCAGCCACGGAACTGAA
CATCTCCAACTCGTCGGCCACCCGCCTCATCATGGGCATCGAGGATCGGCTCGGCGCACGCCTGCTGAACCGCACGACGC
GCAGCCTGTCGCTCACCGATGCCGGTCATCTGTATCTCGCGCAGATCCGTCACGTGATCGAGGAAATCGACCGCGTCGAG
GACACGATCGCGTCGATGCATCACGAGCCGATCGGATCGCTGAAGATCGCCGCGCCGGTCATGTTCGGCATGCACGTGCT
CGCCCCGGCGATCGATGCGTTCAAGACGCAGCATCCGGCCATCGTGCCGGAAGTCACGATCGTCGACCGCCATGTCGATC
TCGTATCGGAGGGCTTCGACGTCGGGCTGCTGCTGTCGCAGCGCATCAGCACCAACACGCTGGTGACGCGCCCGCTCACG
CGGCTCAAGCGGATCGTCTGCGCGGCGCCCCGGTATGTCGAAGCTCACGGTGCACCGATCCATCCGCACGATCTCGCGTC
CCATTCGTGCCTGACGTTCCATGCCGACTTCGCGGGCGAATACCTGTCGTTCGATCACGAGCCGACACGCGTCGCGGTGC
GGCCGAACAAATCCGCATCGTCGAACAACATCGGGCTGATCCGGAACTGGGCGCTGTCGGGCATGGGCATCGCGGTGCTG
CCCGACTTCCTAGTGGAAGCGGATCTCGCCGACGGACGGCTGCTCGCGCTGCTGCCCGACTATCGGCTCGAGGAGCTCGA
GATGAATATCGCGTACCCGAGCCGACGGCACTTTCCGCGCAAGACGCGGCTTTTCGTCGATCACCTGGTCGAGTATTTCG
TCAGGTGA

Upstream 100 bases:

>100_bases
AACACATCATTTCGTAATACTTATTCGCGTGAGTCATTCGTTCAAATACGACGCGTCGACAGATAGAATTAAACAAACAA
TTCTATTTACCGATAAAAAA

Downstream 100 bases:

>100_bases
AAGAAGGGTTCAATCTGAACTGCACCCCAAAAGTTGGACACCCGTCCAACCTTTGGGGTGTTTTTCATGACGAAGTACAA
CGAGCAGTTCAAGCAACGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDELLPMRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAGHLYLAQIRHVIEEIDRVE
DTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTQHPAIVPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLT
RLKRIVCAAPRYVEAHGAPIHPHDLASHSCLTFHADFAGEYLSFDHEPTRVAVRPNKSASSNNIGLIRNWALSGMGIAVL
PDFLVEADLADGRLLALLPDYRLEELEMNIAYPSRRHFPRKTRLFVDHLVEYFVR

Sequences:

>Translated_295_residues
MDELLPMRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAGHLYLAQIRHVIEEIDRVE
DTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTQHPAIVPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLT
RLKRIVCAAPRYVEAHGAPIHPHDLASHSCLTFHADFAGEYLSFDHEPTRVAVRPNKSASSNNIGLIRNWALSGMGIAVL
PDFLVEADLADGRLLALLPDYRLEELEMNIAYPSRRHFPRKTRLFVDHLVEYFVR
>Mature_295_residues
MDELLPMRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAGHLYLAQIRHVIEEIDRVE
DTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTQHPAIVPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLT
RLKRIVCAAPRYVEAHGAPIHPHDLASHSCLTFHADFAGEYLSFDHEPTRVAVRPNKSASSNNIGLIRNWALSGMGIAVL
PDFLVEADLADGRLLALLPDYRLEELEMNIAYPSRRHFPRKTRLFVDHLVEYFVR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=32.8767123287671, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=29.9319727891156, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=30.4054054054054, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=30.9027777777778, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=32.9861111111111, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1789440, Length=256, Percent_Identity=27.34375, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=28.9655172413793, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789173, Length=264, Percent_Identity=24.2424242424242, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790011, Length=305, Percent_Identity=23.6065573770492, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=312, Percent_Identity=25.9615384615385, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790783, Length=261, Percent_Identity=24.1379310344828, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI157672245, Length=235, Percent_Identity=26.3829787234043, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI145693105, Length=251, Percent_Identity=25.0996015936255, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33010; Mature: 33010

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELLPMRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHEEEECC
AGHLYLAQIRHVIEEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTQHPA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCC
IVPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPI
CCCEEEEEHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
HPHDLASHSCLTFHADFAGEYLSFDHEPTRVAVRPNKSASSNNIGLIRNWALSGMGIAVL
CHHHHCCCCEEEEEHHHCHHHHCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCHHHH
PDFLVEADLADGRLLALLPDYRLEELEMNIAYPSRRHFPRKTRLFVDHLVEYFVR
HHHHHHCCCCCCEEEEECCCCCHHHHEEEECCCCHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDELLPMRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHEEEECC
AGHLYLAQIRHVIEEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTQHPA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCC
IVPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPI
CCCEEEEEHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
HPHDLASHSCLTFHADFAGEYLSFDHEPTRVAVRPNKSASSNNIGLIRNWALSGMGIAVL
CHHHHCCCCEEEEEHHHCHHHHCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCHHHH
PDFLVEADLADGRLLALLPDYRLEELEMNIAYPSRRHFPRKTRLFVDHLVEYFVR
HHHHHHCCCCCCEEEEECCCCCHHHHEEEECCCCHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]