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The map label for this gene is abgR [H]

Identifier: 115352762

GI number: 115352762

Start: 2986754

End: 2987674

Strand: Direct

Name: abgR [H]

Synonym: Bamb_2711

Alternate gene names: 115352762

Gene position: 2986754-2987674 (Clockwise)

Preceding gene: 115352757

Following gene: 115352763

Centisome position: 83.98

GC content: 67.86

Gene sequence:

>921_bases
GTGAAACACCATCAGCTCCGGGCGCTTGCCGCCATCGCCGAACACGGGAGCCTGCGCGCCGCCGCGCGTGCGATCCATCT
GTCCCAGCCCGCACTCACCAAGGCCATCCGCGAACTCGAGCAGGACCTCGGCGTGCCGCTCGTCACGCGCAACGCGCGCG
GCGCGCAGCTCACGCGCTTCGGCCAGGCGGTCTATGCACGCGCGCGGCTGATCCTCGCGGAGATCCAGCACGCGCGCGAC
GACGTGATCCATCTGTCGGGCGGCAAGGAAGGCGCGCTCGCGTGCGCGCTGACGCCGCTGATGTCGCTCGGCTTCCTGCC
GGCCGCGCTCGACGCGTTCCGTCAGCGCATGCCGACGATCCGCCTCGACGTGCGCGAAGGCTTTCTCGACACGGCGCTGC
CGCGCCTGCGCGACGGCACGCTCGACTTCGTGATCGCGATCGTCGATGCGACGCGGCTGTCGCCCGAATTCACGTTCCGG
CCGCTCATCGAATCGGCGCTGATCCTGATGACGCGCGCGAGCAATCCGCTACGCCACTGCACGTCGCTCGCGCAGCTGCA
GGATGCGCAGTGGGTGCTCAACACGTCGCCGGAAAGCATCGGCCGGCTGCTGCAGAACATGTTCGTCGCGCACGGCTACG
CGGCGCCGCAGCCGATCGTCGAATGCACGTCGTTCAGCGCGGCGTTCGCGCTGTCGGTGCATACCGACAGCGTGTCGTGC
GTGCCGCAGCTCTTCATGGAGATCGACTGGATACGCGAACGGATGGTCACGATCGATGTGAAGGAGACGATTCCGACCGT
ATCGGCCGGTGTGCTCACGCGGCGCGATGCGCTGAACACGGTCGCATGCGACTACCTGATCCACTGCTTCGTCGAGGCCG
TGCGCCGGTACGATCCCGCGAAACTGCTGTGGCGATCGTGA

Upstream 100 bases:

>100_bases
CATTTTTCGATCGTGATAACGCCTGGTTATCGCGCGCTTTGCCCGCGCGATCGCGGTGTAGGATACGAACGTCGCTACTG
CCGCCGCGCCCCGCCACGCC

Downstream 100 bases:

>100_bases
CCTGTCCTATTCGATTCGAATCGCACTACGAATATCGATTTTCTTTATAAGAAAAATCACGTCTAATTTCGTACAATTAC
TAAATACAAATCGAGGCAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKHHQLRALAAIAEHGSLRAAARAIHLSQPALTKAIRELEQDLGVPLVTRNARGAQLTRFGQAVYARARLILAEIQHARD
DVIHLSGGKEGALACALTPLMSLGFLPAALDAFRQRMPTIRLDVREGFLDTALPRLRDGTLDFVIAIVDATRLSPEFTFR
PLIESALILMTRASNPLRHCTSLAQLQDAQWVLNTSPESIGRLLQNMFVAHGYAAPQPIVECTSFSAAFALSVHTDSVSC
VPQLFMEIDWIRERMVTIDVKETIPTVSAGVLTRRDALNTVACDYLIHCFVEAVRRYDPAKLLWRS

Sequences:

>Translated_306_residues
MKHHQLRALAAIAEHGSLRAAARAIHLSQPALTKAIRELEQDLGVPLVTRNARGAQLTRFGQAVYARARLILAEIQHARD
DVIHLSGGKEGALACALTPLMSLGFLPAALDAFRQRMPTIRLDVREGFLDTALPRLRDGTLDFVIAIVDATRLSPEFTFR
PLIESALILMTRASNPLRHCTSLAQLQDAQWVLNTSPESIGRLLQNMFVAHGYAAPQPIVECTSFSAAFALSVHTDSVSC
VPQLFMEIDWIRERMVTIDVKETIPTVSAGVLTRRDALNTVACDYLIHCFVEAVRRYDPAKLLWRS
>Mature_306_residues
MKHHQLRALAAIAEHGSLRAAARAIHLSQPALTKAIRELEQDLGVPLVTRNARGAQLTRFGQAVYARARLILAEIQHARD
DVIHLSGGKEGALACALTPLMSLGFLPAALDAFRQRMPTIRLDVREGFLDTALPRLRDGTLDFVIAIVDATRLSPEFTFR
PLIESALILMTRASNPLRHCTSLAQLQDAQWVLNTSPESIGRLLQNMFVAHGYAAPQPIVECTSFSAAFALSVHTDSVSC
VPQLFMEIDWIRERMVTIDVKETIPTVSAGVLTRRDALNTVACDYLIHCFVEAVRRYDPAKLLWRS

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=32.3024054982818, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789506, Length=264, Percent_Identity=26.8939393939394, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI157672245, Length=280, Percent_Identity=30, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081904, Length=297, Percent_Identity=28.6195286195286, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=25.0871080139373, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790399, Length=195, Percent_Identity=29.2307692307692, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788887, Length=205, Percent_Identity=28.2926829268293, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787530, Length=197, Percent_Identity=24.8730964467005, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787806, Length=247, Percent_Identity=27.1255060728745, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790783, Length=201, Percent_Identity=27.8606965174129, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33864; Mature: 33864

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHHQLRALAAIAEHGSLRAAARAIHLSQPALTKAIRELEQDLGVPLVTRNARGAQLTRF
CCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
GQAVYARARLILAEIQHARDDVIHLSGGKEGALACALTPLMSLGFLPAALDAFRQRMPTI
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCEE
RLDVREGFLDTALPRLRDGTLDFVIAIVDATRLSPEFTFRPLIESALILMTRASNPLRHC
EEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHH
TSLAQLQDAQWVLNTSPESIGRLLQNMFVAHGYAAPQPIVECTSFSAAFALSVHTDSVSC
HHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEECCCHHH
VPQLFMEIDWIRERMVTIDVKETIPTVSAGVLTRRDALNTVACDYLIHCFVEAVRRYDPA
HHHHHHHHHHHHHHHEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KLLWRS
HHHCCC
>Mature Secondary Structure
MKHHQLRALAAIAEHGSLRAAARAIHLSQPALTKAIRELEQDLGVPLVTRNARGAQLTRF
CCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
GQAVYARARLILAEIQHARDDVIHLSGGKEGALACALTPLMSLGFLPAALDAFRQRMPTI
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCEE
RLDVREGFLDTALPRLRDGTLDFVIAIVDATRLSPEFTFRPLIESALILMTRASNPLRHC
EEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHH
TSLAQLQDAQWVLNTSPESIGRLLQNMFVAHGYAAPQPIVECTSFSAAFALSVHTDSVSC
HHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEECCCHHH
VPQLFMEIDWIRERMVTIDVKETIPTVSAGVLTRRDALNTVACDYLIHCFVEAVRRYDPA
HHHHHHHHHHHHHHHEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KLLWRS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]