Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352756

Identifier: 115352756

GI number: 115352756

Start: 2980885

End: 2981568

Strand: Direct

Name: 115352756

Synonym: Bamb_2705

Alternate gene names: NA

Gene position: 2980885-2981568 (Clockwise)

Preceding gene: 115352753

Following gene: 115352757

Centisome position: 83.81

GC content: 71.35

Gene sequence:

>684_bases
ATGACCCTGCATATCGGCCTTCTCGTGTTTCCGGGCGTCCAGCAACTCGATCTCACCGGCCCGCACGACGTGCTCGCGTC
GCTGCCCGACGCGGCTGTCCATCTGGTCTGGAAATCGCGCGACACCGTCGCATCGAGCAGCGGCCTCGCGCTCGCGCCGA
CCTGCACGTTCGACGACTGCCCGCCGCTCGACGTGATCTGCGTGCCCGGCGGCATCGGCATCAACGACCTGCTGCTCGAT
GCGGAAACGATCGCGTTCGTGCAGCGCCGCGCGGCCACCGCGCGCTATGTGACGTCGGTCTGCACGGGCGCGCTGCTGCT
CGGCGTGGCCGGCCTGCTGCGCGGACGCCGCGCGACGACGCACTGGGCGTTTCACGAACTGCTCGAACCGCTCGGTGCGG
TGCCGGTGCGCGAGCGCGTGGTGCGCGACGGCAACCTGATCACCGGCGGCGGCGTGACGGCCGGCATCGACTTCGCATTG
ACGATCGCCGCCGAACTCGCGGGCGACGAAGAGGCGCAGTCGATCCAGCTGGCGCTCGAATACGCGCCGGCGCCGCCGTT
CGACGCGGGCTCGCCGGATACCGCGCCCGCGTCGGTGCTGAAGCGCGTGACCGAGCGCTCGGCGGCGGGGCTGGAGAAGC
GCAGGCAGACGATCGACGCGGCCTTGCGTGCGATGGCGCGCTGA

Upstream 100 bases:

>100_bases
AACGTGGGTGATATGGCAATTTCGCCAAACACTACGCGCCTAGAATCGATCTGTCCATCGTGCGCCGATCGCGGCGCCCC
CTTCCCTACGGAGCGTTCGC

Downstream 100 bases:

>100_bases
TCCCGCGCATTCGACCACACCGCCCGCCTTGCGCGGCCTCCACACTCACGGACCTATCGATGAACATCATCCGCAGCACC
GCGTTCACCGCCGAGCGCCC

Product: ThiJ/PfpI domain-containing protein

Products: NA

Alternate protein names: ThiJ/PfpI Domain Protein; ThiJ/PfpI Family Protein; Transcriptional Regulator; AraC Family Transcriptional Regulator; ThiJ/PfpI; Transcriptional Regulator AraC Family; DJ-1/PfpI Family Protein; Isonitrile Hydratase; ThiJ Family Protein; DJ-1/PfpI Family; Transcriptional Regulatory Protein; Transcription Regulator Protein; DJ-1/PfpI Superfamily Protein; Twin-Arginine Translocation Pathway Signal; PfpI Family Protein; Cyclohexyl-Isocyanide Hydratase; Hydratase; ThiH/PfpI Family Amidotransferase; ADPA Family Transcriptional Regulator; Intracellular Protease/Amidase; Transcriptional Regulator DarR; Thij/Pfpi Family Protein; Transcription Regulator Protein ThiJ/PfpI; Transcriptional Regulator Protein Thij/Pfpi; Transcriptional Regulator Protein; ThiJ/PfpI Family Transcriptional Regulator Protein; DsbA Family ThiolDisulfide Interchange Protein; Transcription Regulator Protein Thij/Pfpi; Transcriptional Regulator ThiJ/PfpI Family Protein; Secreted Protein; ThiJ/PfpI Family Transcriptional Regulator

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MTLHIGLLVFPGVQQLDLTGPHDVLASLPDAAVHLVWKSRDTVASSSGLALAPTCTFDDCPPLDVICVPGGIGINDLLLD
AETIAFVQRRAATARYVTSVCTGALLLGVAGLLRGRRATTHWAFHELLEPLGAVPVRERVVRDGNLITGGGVTAGIDFAL
TIAAELAGDEEAQSIQLALEYAPAPPFDAGSPDTAPASVLKRVTERSAAGLEKRRQTIDAALRAMAR

Sequences:

>Translated_227_residues
MTLHIGLLVFPGVQQLDLTGPHDVLASLPDAAVHLVWKSRDTVASSSGLALAPTCTFDDCPPLDVICVPGGIGINDLLLD
AETIAFVQRRAATARYVTSVCTGALLLGVAGLLRGRRATTHWAFHELLEPLGAVPVRERVVRDGNLITGGGVTAGIDFAL
TIAAELAGDEEAQSIQLALEYAPAPPFDAGSPDTAPASVLKRVTERSAAGLEKRRQTIDAALRAMAR
>Mature_226_residues
TLHIGLLVFPGVQQLDLTGPHDVLASLPDAAVHLVWKSRDTVASSSGLALAPTCTFDDCPPLDVICVPGGIGINDLLLDA
ETIAFVQRRAATARYVTSVCTGALLLGVAGLLRGRRATTHWAFHELLEPLGAVPVRERVVRDGNLITGGGVTAGIDFALT
IAAELAGDEEAQSIQLALEYAPAPPFDAGSPDTAPASVLKRVTERSAAGLEKRRQTIDAALRAMAR

Specific function: Unknown

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23776; Mature: 23644

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLHIGLLVFPGVQQLDLTGPHDVLASLPDAAVHLVWKSRDTVASSSGLALAPTCTFDDC
CEEEEEEEEECCCCEECCCCHHHHHHHCCHHHEEEEECCCCCCCCCCCEEEECCCCCCCC
PPLDVICVPGGIGINDLLLDAETIAFVQRRAATARYVTSVCTGALLLGVAGLLRGRRATT
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
HWAFHELLEPLGAVPVRERVVRDGNLITGGGVTAGIDFALTIAAELAGDEEAQSIQLALE
HHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCHHHEEEEEEE
YAPAPPFDAGSPDTAPASVLKRVTERSAAGLEKRRQTIDAALRAMAR
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLHIGLLVFPGVQQLDLTGPHDVLASLPDAAVHLVWKSRDTVASSSGLALAPTCTFDDC
EEEEEEEEECCCCEECCCCHHHHHHHCCHHHEEEEECCCCCCCCCCCEEEECCCCCCCC
PPLDVICVPGGIGINDLLLDAETIAFVQRRAATARYVTSVCTGALLLGVAGLLRGRRATT
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
HWAFHELLEPLGAVPVRERVVRDGNLITGGGVTAGIDFALTIAAELAGDEEAQSIQLALE
HHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCHHHEEEEEEE
YAPAPPFDAGSPDTAPASVLKRVTERSAAGLEKRRQTIDAALRAMAR
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA