Click here to switch to the map view.

The map label for this gene is qseC [H]

Identifier: 115352752

GI number: 115352752

Start: 2974887

End: 2976440

Strand: Direct

Name: qseC [H]

Synonym: Bamb_2701

Alternate gene names: 115352752

Gene position: 2974887-2976440 (Clockwise)

Preceding gene: 115352751

Following gene: 115352753

Centisome position: 83.65

GC content: 71.69

Gene sequence:

>1554_bases
ATGGCCACCCCGGCCCATTCCCGCCGCCCGAGCGGCGCGCCGGCGTCGGCCGCCGACGATGCACGCGACGCGCGCTACGA
GAACCCGTTCGCGCCGCCCGATGAAACCGATGCGCCCGAGGCGCCGCGCCCACGCTCGCTGTTCGGCGAAATCCTCGACT
GGATGCTCGCGCCGCTGCTACTGCTGTGGCCGATGAGCATCGCCGTCACCTATCTCGTCGCGAAGACGATCGCGAACGGC
CCGTTCGATCGCGCGCTCGAGACCAACGCATACGTGCTCGCGCGGCAGATCCATCCGGTCAACGGCGTCGCCGAGCTGAC
GCTGCCGCAGCAGACGCGCGACTTCCTGCGCGCGGACAACGTCGACAGCGTGTACTTCCAGGTGCTCGGCACCCGCGGCG
AGCTGGTCGCGGGCGAGGCCGACATGCCGCTGCCGCGCGACGAGGACCGCCCGCCGCCGGGCGTCGTCGTGTTCCGCGAC
GACCTTTTGCGCGGCAACGACGTGCGCGTCGCGTATACGACCGTCGCACTGCCGGAGCCGGGCGGCGCACAGCCCGTGCT
CGTGCAGGTCGGCGAGACGCTCGACAAGCGCAACGCACTCGCGAACGACATCATCAAGGGCGTGATCCTGCCGCAGTTCG
TGATCCTGCCGCTCGCGATCCTGCTCGTCTGGTTCGGGCTGTCGCGCGGGCTCGCGCCGCTCAACGCGCTGCAGGCGCAC
ATCCGCGCGCGGCGGCCCGACGACCTGTCGCCCGTCGAGGCGCAGCGCGCGCCGCCCGAGATCGAGCCGCTCGTCACGTC
GTTCAACGACCTGCTCGCGCGGCTCGAGCAGAACATGGCGTTGCAAAAGCGCTTCATCGCCGACGCCGCGCACCAGATGA
AGACCCCGCTGGCGGGCCTGCGCACGCAGGCCGAATTCGCGTTGCGCCACCCCGTGCCGCCCGACGTGCAGCGCTCGCTC
GAACAGATCGCGACGAGTTCCGAGCAGGCCGCGCGGCTCGTCACGCAACTGCTCGCGCTCGCGCGCGCCGAGAACCGCGC
GAGCGGGCTGACCTTCGAGCCGGTCGAAATCGGCGCGCTGGCGCGCCGCACGGTGCGCGACTGGGTGCAGGCCGCGCTCG
CGAAGCGCATGGATCTCGGTTACGAAGGCCCGGAGGACGACGCGCCGCTCGACGTCGACGGCAATCCCGTGATGCTGCGC
GAGATGCTCGGCAACCTGGTCGACAACGCGATCCGCTACACGCCCGAAGGCGGCCGCATCACCGTGCGCGTGCGGGCCGA
GCAGGCGGCGCGGCGCGTGCATCTCGAAGTCGAGGACACCGGGCCCGGCATCCCGGCCGCCGAACGCGAGCGCGTGGTCG
AGCGCTTCTACCGGATCCTCGGCCGCGAAGGCGACGGCAGCGGCCTCGGGCTCGCGATCGTGCGCGAGATCGCGACGCAG
CACGGCGGCACGCTGACGCTCGACGATCATGTCTATCAACAGGCGCCGCGCCTTGCCGGCACGCTCGTGAGCATCAGCCT
GCCGCTGTCGGAGCCCGCCGCGGATCCAGCCTGA

Upstream 100 bases:

>100_bases
TATTGCCTCGAGAAGGTCGCGCCCGCCGCGCCGACCGATACGGCAGCGCCCCAGCCCGTGGTGGCCGGCACGCCGCTGCG
CTGAAGCCGGGCGCGCCGCG

Downstream 100 bases:

>100_bases
CACGCGCAGGCCCTCACCTCACCCGCACCGCGCACCCCGCCGCGATCGCATCGAAACCGGTGCTTTACCGCCCGTTTGCG
ACCTGATCGAGGGGCGAAGC

Product: periplasmic sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MATPAHSRRPSGAPASAADDARDARYENPFAPPDETDAPEAPRPRSLFGEILDWMLAPLLLLWPMSIAVTYLVAKTIANG
PFDRALETNAYVLARQIHPVNGVAELTLPQQTRDFLRADNVDSVYFQVLGTRGELVAGEADMPLPRDEDRPPPGVVVFRD
DLLRGNDVRVAYTTVALPEPGGAQPVLVQVGETLDKRNALANDIIKGVILPQFVILPLAILLVWFGLSRGLAPLNALQAH
IRARRPDDLSPVEAQRAPPEIEPLVTSFNDLLARLEQNMALQKRFIADAAHQMKTPLAGLRTQAEFALRHPVPPDVQRSL
EQIATSSEQAARLVTQLLALARAENRASGLTFEPVEIGALARRTVRDWVQAALAKRMDLGYEGPEDDAPLDVDGNPVMLR
EMLGNLVDNAIRYTPEGGRITVRVRAEQAARRVHLEVEDTGPGIPAAERERVVERFYRILGREGDGSGLGLAIVREIATQ
HGGTLTLDDHVYQQAPRLAGTLVSISLPLSEPAADPA

Sequences:

>Translated_517_residues
MATPAHSRRPSGAPASAADDARDARYENPFAPPDETDAPEAPRPRSLFGEILDWMLAPLLLLWPMSIAVTYLVAKTIANG
PFDRALETNAYVLARQIHPVNGVAELTLPQQTRDFLRADNVDSVYFQVLGTRGELVAGEADMPLPRDEDRPPPGVVVFRD
DLLRGNDVRVAYTTVALPEPGGAQPVLVQVGETLDKRNALANDIIKGVILPQFVILPLAILLVWFGLSRGLAPLNALQAH
IRARRPDDLSPVEAQRAPPEIEPLVTSFNDLLARLEQNMALQKRFIADAAHQMKTPLAGLRTQAEFALRHPVPPDVQRSL
EQIATSSEQAARLVTQLLALARAENRASGLTFEPVEIGALARRTVRDWVQAALAKRMDLGYEGPEDDAPLDVDGNPVMLR
EMLGNLVDNAIRYTPEGGRITVRVRAEQAARRVHLEVEDTGPGIPAAERERVVERFYRILGREGDGSGLGLAIVREIATQ
HGGTLTLDDHVYQQAPRLAGTLVSISLPLSEPAADPA
>Mature_516_residues
ATPAHSRRPSGAPASAADDARDARYENPFAPPDETDAPEAPRPRSLFGEILDWMLAPLLLLWPMSIAVTYLVAKTIANGP
FDRALETNAYVLARQIHPVNGVAELTLPQQTRDFLRADNVDSVYFQVLGTRGELVAGEADMPLPRDEDRPPPGVVVFRDD
LLRGNDVRVAYTTVALPEPGGAQPVLVQVGETLDKRNALANDIIKGVILPQFVILPLAILLVWFGLSRGLAPLNALQAHI
RARRPDDLSPVEAQRAPPEIEPLVTSFNDLLARLEQNMALQKRFIADAAHQMKTPLAGLRTQAEFALRHPVPPDVQRSLE
QIATSSEQAARLVTQLLALARAENRASGLTFEPVEIGALARRTVRDWVQAALAKRMDLGYEGPEDDAPLDVDGNPVMLRE
MLGNLVDNAIRYTPEGGRITVRVRAEQAARRVHLEVEDTGPGIPAAERERVVERFYRILGREGDGSGLGLAIVREIATQH
GGTLTLDDHVYQQAPRLAGTLVSISLPLSEPAADPA

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. May activate qseB by phosphorylation [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789403, Length=437, Percent_Identity=29.7482837528604, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1786783, Length=309, Percent_Identity=32.6860841423948, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1790551, Length=288, Percent_Identity=34.0277777777778, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790861, Length=269, Percent_Identity=32.7137546468402, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1786600, Length=241, Percent_Identity=31.9502074688797, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788393, Length=282, Percent_Identity=27.3049645390071, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788279, Length=304, Percent_Identity=26.3157894736842, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI145693157, Length=220, Percent_Identity=30, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1790346, Length=260, Percent_Identity=29.2307692307692, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI48994928, Length=207, Percent_Identity=28.0193236714976, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789149, Length=216, Percent_Identity=27.7777777777778, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082128, Length=239, Percent_Identity=30.1255230125523, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787374, Length=288, Percent_Identity=28.4722222222222, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1790436, Length=250, Percent_Identity=26.8, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788713, Length=256, Percent_Identity=24.609375, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87081816, Length=229, Percent_Identity=27.9475982532751, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787894, Length=261, Percent_Identity=28.735632183908, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786912, Length=217, Percent_Identity=30.4147465437788, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788549, Length=224, Percent_Identity=23.2142857142857, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789808, Length=233, Percent_Identity=27.0386266094421, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790300, Length=250, Percent_Identity=29.2, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 56359; Mature: 56228

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPAHSRRPSGAPASAADDARDARYENPFAPPDETDAPEAPRPRSLFGEILDWMLAPLL
CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LLWPMSIAVTYLVAKTIANGPFDRALETNAYVLARQIHPVNGVAELTLPQQTRDFLRADN
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHCCC
VDSVYFQVLGTRGELVAGEADMPLPRDEDRPPPGVVVFRDDLLRGNDVRVAYTTVALPEP
CHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCC
GGAQPVLVQVGETLDKRNALANDIIKGVILPQFVILPLAILLVWFGLSRGLAPLNALQAH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IRARRPDDLSPVEAQRAPPEIEPLVTSFNDLLARLEQNMALQKRFIADAAHQMKTPLAGL
HHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RTQAEFALRHPVPPDVQRSLEQIATSSEQAARLVTQLLALARAENRASGLTFEPVEIGAL
HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHH
ARRTVRDWVQAALAKRMDLGYEGPEDDAPLDVDGNPVMLREMLGNLVDNAIRYTPEGGRI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCEE
TVRVRAEQAARRVHLEVEDTGPGIPAAERERVVERFYRILGREGDGSGLGLAIVREIATQ
EEEEEHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
HGGTLTLDDHVYQQAPRLAGTLVSISLPLSEPAADPA
CCCEEEECHHHHHHHHHHHCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
ATPAHSRRPSGAPASAADDARDARYENPFAPPDETDAPEAPRPRSLFGEILDWMLAPLL
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LLWPMSIAVTYLVAKTIANGPFDRALETNAYVLARQIHPVNGVAELTLPQQTRDFLRADN
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHCCC
VDSVYFQVLGTRGELVAGEADMPLPRDEDRPPPGVVVFRDDLLRGNDVRVAYTTVALPEP
CHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCC
GGAQPVLVQVGETLDKRNALANDIIKGVILPQFVILPLAILLVWFGLSRGLAPLNALQAH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IRARRPDDLSPVEAQRAPPEIEPLVTSFNDLLARLEQNMALQKRFIADAAHQMKTPLAGL
HHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RTQAEFALRHPVPPDVQRSLEQIATSSEQAARLVTQLLALARAENRASGLTFEPVEIGAL
HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHH
ARRTVRDWVQAALAKRMDLGYEGPEDDAPLDVDGNPVMLREMLGNLVDNAIRYTPEGGRI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCEE
TVRVRAEQAARRVHLEVEDTGPGIPAAERERVVERFYRILGREGDGSGLGLAIVREIATQ
EEEEEHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
HGGTLTLDDHVYQQAPRLAGTLVSISLPLSEPAADPA
CCCEEEECHHHHHHHHHHHCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]