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The map label for this gene is tctD [H]

Identifier: 115352751

GI number: 115352751

Start: 2974022

End: 2974870

Strand: Direct

Name: tctD [H]

Synonym: Bamb_2700

Alternate gene names: 115352751

Gene position: 2974022-2974870 (Clockwise)

Preceding gene: 115352741

Following gene: 115352752

Centisome position: 83.62

GC content: 66.31

Gene sequence:

>849_bases
ATGCAGACACTGTATAAAAAAACAGTGTTTTGTGCAAGCCCGCAATGCAGAGCGTTGTACACGAATAACTTCGGAGACAG
CCGCGCCGGCGCGAATGCCCGCCGGCCATCGGTCAGCACCATGCGAATTCTCATCGCCGAAGATGACAGCATACTCGCGG
ACGGCCTCACCCGGTCACTCCGCCAATCGGGCTATGCGGTCGACCACGTGAAGAGCGGCGTCGACGCCGATACGGCGCTG
TCGATGCAGACATTCGACCTGCTGATCCTCGATCTCGGGCTGCCGAAAATGTCCGGGCTCGACGTGCTCAAGCGCCTGCG
CGCCCGCAATTCCAACCTCCCCGTGCTGATCCTGACCGCCGCCGACAGCGTCGACGAACGCGTGAAGGGGCTCGACCTCG
GCGCCGACGATTACATGGCCAAGCCGTTCGCGCTCAACGAGCTGGAAGCGCGCGTGCGCGCGCTGACCCGGCGCGGCGCG
GGCGGCGGCCCGACCGTCGTGCGCCACGGCTCGCTCGCGTTCGACCAGGTCGGCCGCATCGCATATGCGAACGATCACGT
GCTCGATCTCTCCGCGCGCGAGCTCGGCCTGCTCGAGGTGCTGCTGCAGCGGATCGGCCGGCTCGTGTCGAAGGAGCAGC
TCGTCGATCACCTGTGCGAATGGGGCGAGGAAGTCAGCAACAACGCGATCGAAGTCTACGTGCACCGGCTGCGCAAGAAG
ATCGAACCGAGCGGCGTGCGGATCTCGACCGTGCGCGGCCTCGGCTATTGCCTCGAGAAGGTCGCGCCCGCCGCGCCGAC
CGATACGGCAGCGCCCCAGCCCGTGGTGGCCGGCACGCCGCTGCGCTGA

Upstream 100 bases:

>100_bases
CGGTCATCCCGGAGCCCTTCTTGCTATCTTCCATGAATCGTCCTTTGCTATGATGAGCAGCGTCTGTTAGAGGCGCGCCC
ACTTCAAGCGCTGCCCATGA

Downstream 100 bases:

>100_bases
AGCCGGGCGCGCCGCGATGGCCACCCCGGCCCATTCCCGCCGCCCGAGCGGCGCGCCGGCGTCGGCCGCCGACGATGCAC
GCGACGCGCGCTACGAGAAC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MQTLYKKTVFCASPQCRALYTNNFGDSRAGANARRPSVSTMRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTAL
SMQTFDLLILDLGLPKMSGLDVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA
GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKK
IEPSGVRISTVRGLGYCLEKVAPAAPTDTAAPQPVVAGTPLR

Sequences:

>Translated_282_residues
MQTLYKKTVFCASPQCRALYTNNFGDSRAGANARRPSVSTMRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTAL
SMQTFDLLILDLGLPKMSGLDVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA
GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKK
IEPSGVRISTVRGLGYCLEKVAPAAPTDTAAPQPVVAGTPLR
>Mature_282_residues
MQTLYKKTVFCASPQCRALYTNNFGDSRAGANARRPSVSTMRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTAL
SMQTFDLLILDLGLPKMSGLDVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA
GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKK
IEPSGVRISTVRGLGYCLEKVAPAAPTDTAAPQPVVAGTPLR

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=44.954128440367, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1790552, Length=218, Percent_Identity=42.6605504587156, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=38.8392857142857, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1787375, Length=222, Percent_Identity=38.2882882882883, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=36.6515837104072, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=35.2678571428571, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=33.7837837837838, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=34.061135371179, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788394, Length=233, Percent_Identity=31.7596566523605, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=31.6742081447964, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=29.646017699115, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788713, Length=127, Percent_Identity=38.5826771653543, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790863, Length=238, Percent_Identity=26.0504201680672, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1790299, Length=144, Percent_Identity=31.9444444444444, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790437, Length=108, Percent_Identity=38.8888888888889, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI145693140, Length=242, Percent_Identity=27.6859504132231, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787487, Length=114, Percent_Identity=35.0877192982456, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=31.7757009345794, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 30630; Mature: 30630

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLYKKTVFCASPQCRALYTNNFGDSRAGANARRPSVSTMRILIAEDDSILADGLTRSL
CCCHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
RQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGLDVLKRLRARNSNLPVLILTA
HHCCCCHHHHHCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCCCEEEEEC
ADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGAGGGPTVVRHGSLAFDQVGRI
CCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHCCE
AYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKK
EECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
IEPSGVRISTVRGLGYCLEKVAPAAPTDTAAPQPVVAGTPLR
CCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQTLYKKTVFCASPQCRALYTNNFGDSRAGANARRPSVSTMRILIAEDDSILADGLTRSL
CCCHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
RQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGLDVLKRLRARNSNLPVLILTA
HHCCCCHHHHHCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCCCEEEEEC
ADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGAGGGPTVVRHGSLAFDQVGRI
CCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHCCE
AYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKK
EECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
IEPSGVRISTVRGLGYCLEKVAPAAPTDTAAPQPVVAGTPLR
CCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]