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The map label for this gene is abgR [H]

Identifier: 115352683

GI number: 115352683

Start: 2896502

End: 2897422

Strand: Direct

Name: abgR [H]

Synonym: Bamb_2632

Alternate gene names: 115352683

Gene position: 2896502-2897422 (Clockwise)

Preceding gene: 115352678

Following gene: 115352684

Centisome position: 81.44

GC content: 71.01

Gene sequence:

>921_bases
ATGACTTTCGATCTCCGGCAATTGCGTGCTTTCACGACCATCGTCACGTGCGGCAGCCTCGGCCGCGCGGCCGACGCGCT
GCACGTGACCCAACCGGCGCTCAGCCGCATCCTGAAGCGGCTCGAGGATCAGGTCGGCGCGCCGCTGTTCGAGCGTCACT
CGAAAGGCGTGCAGCTGACCGCGTTCGGCGAGGCACTGCTGCCGCACGCGACGCTGCTGCAGCACGAGGCCGAGCACGCG
CGCGAGGAGCTCGACGCGATGCGCGGCTTCGCGAAGGGCACGATCAAGGTCGGCACGGTGGGCAGCATCGCGAGCCTCGT
GCTGCCGGTCGCGGTCGGCCGCGTGCTCGACCGCTGGCCGAACCTGCGCGTCGAGATTCTCGAAGGCGTGTGGGACCGGC
TCGCGGATGGCCTGAACAAGCATGAGATCGATCTCGCGCTGTCCGCGCACGGGCCCGACACCGACGAGATCGTCGCGATT
CCGGAGTGCCGCTGGGAGGATCGCAGCCATATCGTTGCGGCGCCGCACCATCCGCTGCGCGCGCTCGGACGCGCGCCCAC
ACTCGCCGACACGCTGCACGCGCGCTGGGCGAGTCCGCCGCGCGGCACCGCGCCGTTCGACCACATGCGCGCGACCTTCG
ACGCGCACGGGCTCGCGCTACCCGACATCTCGGTCGAGACGCGCTCGGTCACGACGCTGAAGAGTCTCGTCGCGCACGCG
GGCTTCCTGAGCTGGATGGCCGAACCGATGTACGGCGCCGAACAGCGCGCCGGCACGATCGACACGCTGCCGGTGCGCGA
AGTGGTGGCGGTGCGCACGCTCACCGCGTTTCGCCGCCGCCACGGGATCCTGCCGGGGCCGGCCGGCAAGCTGCTCGACG
AACTCGTCGCGCTCACTCGCGACGCGCGCGACGCACGCTGA

Upstream 100 bases:

>100_bases
TGCTCGGGCGTCTCCTCGGTGGCTTGGCGGTTTCCACAGTATTGAAGCGGGAGTCATTCTCGGATACTGTATTTTCTGAG
AAAAGCCATTACGATTCGGC

Downstream 100 bases:

>100_bases
CACCCGCCCTCCCGCCCCGCAGCGCACCATCGAAATGCCGCGTCGCCGCCTTGACTTTCGCTCGCCCGAATACGATCATT
CGCTCACATGACGAGCAAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTFDLRQLRAFTTIVTCGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLTAFGEALLPHATLLQHEAEHA
REELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEILEGVWDRLADGLNKHEIDLALSAHGPDTDEIVAI
PECRWEDRSHIVAAPHHPLRALGRAPTLADTLHARWASPPRGTAPFDHMRATFDAHGLALPDISVETRSVTTLKSLVAHA
GFLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLDELVALTRDARDAR

Sequences:

>Translated_306_residues
MTFDLRQLRAFTTIVTCGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLTAFGEALLPHATLLQHEAEHA
REELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEILEGVWDRLADGLNKHEIDLALSAHGPDTDEIVAI
PECRWEDRSHIVAAPHHPLRALGRAPTLADTLHARWASPPRGTAPFDHMRATFDAHGLALPDISVETRSVTTLKSLVAHA
GFLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLDELVALTRDARDAR
>Mature_305_residues
TFDLRQLRAFTTIVTCGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLTAFGEALLPHATLLQHEAEHAR
EELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEILEGVWDRLADGLNKHEIDLALSAHGPDTDEIVAIP
ECRWEDRSHIVAAPHHPLRALGRAPTLADTLHARWASPPRGTAPFDHMRATFDAHGLALPDISVETRSVTTLKSLVAHAG
FLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLDELVALTRDARDAR

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=284, Percent_Identity=29.5774647887324, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87081904, Length=262, Percent_Identity=29.3893129770992, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI145693105, Length=161, Percent_Identity=27.9503105590062, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789506, Length=275, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI157672245, Length=174, Percent_Identity=27.5862068965517, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=26.1016949152542, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI48994962, Length=158, Percent_Identity=30.379746835443, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788887, Length=156, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787530, Length=184, Percent_Identity=25.5434782608696, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789639, Length=137, Percent_Identity=27.7372262773723, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788297, Length=152, Percent_Identity=29.6052631578947, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788626, Length=152, Percent_Identity=30.2631578947368, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790399, Length=159, Percent_Identity=24.5283018867925, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789204, Length=239, Percent_Identity=25.5230125523013, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=184, Percent_Identity=28.804347826087, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33430; Mature: 33299

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDLRQLRAFTTIVTCGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLT
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEE
AFGEALLPHATLLQHEAEHAREELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWP
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCC
NLRVEILEGVWDRLADGLNKHEIDLALSAHGPDTDEIVAIPECRWEDRSHIVAAPHHPLR
CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCEEECCCHHHH
ALGRAPTLADTLHARWASPPRGTAPFDHMRATFDAHGLALPDISVETRSVTTLKSLVAHA
HHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GFLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLDELVALTR
HHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
DARDAR
HHCCCC
>Mature Secondary Structure 
TFDLRQLRAFTTIVTCGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLT
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEE
AFGEALLPHATLLQHEAEHAREELDAMRGFAKGTIKVGTVGSIASLVLPVAVGRVLDRWP
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCC
NLRVEILEGVWDRLADGLNKHEIDLALSAHGPDTDEIVAIPECRWEDRSHIVAAPHHPLR
CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCEEECCCHHHH
ALGRAPTLADTLHARWASPPRGTAPFDHMRATFDAHGLALPDISVETRSVTTLKSLVAHA
HHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GFLSWMAEPMYGAEQRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPAGKLLDELVALTR
HHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
DARDAR
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]