Click here to switch to the map view.

The map label for this gene is ybbN [H]

Identifier: 115352665

GI number: 115352665

Start: 2877809

End: 2878657

Strand: Direct

Name: ybbN [H]

Synonym: Bamb_2614

Alternate gene names: 115352665

Gene position: 2877809-2878657 (Clockwise)

Preceding gene: 115352664

Following gene: 115352667

Centisome position: 80.92

GC content: 68.9

Gene sequence:

>849_bases
ATGGACACCACGCTTGCCACTTTCGAGAAAGACGTCATCGAGGCGTCGCTGGACGCCCCCGTGCTGGTCGACTTCTGGGC
GCCGTGGTGCGGCCCCTGCAAGACGCTCGGTCCGCTGCTCGAAAAGCTCGAAGCCGACTATCAGGGCCGCTGGAAGCTCG
TGAAGGTGAACGTCGACGAGAACCAGGAGCTCGCCGCGCACTTCCAGACGCGCAGCATCCCGCACGTGATCGCGTTCGCC
GACGGGCGCCCGGTCGACCAGTTCATCGGCGTGCTGCCGGAAGGCCAGTTGCGCGCGTTCCTCGACCGGCTGCTGCCGGC
GCCCGAGGAAGCCGAACGCCGCGCCGCGCAATACGCGATCGCCGAGTCACGCTACGACGATGCGCTCACCCACCTCGAGG
CGGCGCTCGCACTGAACCCCGGTTTCGACGATGCACGGCTCGACCTGATCGAACTGCTGCTCGCAAACAACCAGGTCGAT
GCCGCGCGCACCGAGGCCGAGCGCCTGTCGCCGCAGACCGTGCAGGGCGCCGACCCGCGCTACCAGGCGATCAAGACCCG
TTTCGATGCGCTCGACGCCACCGCCGACCTGCCGCCGACCGACGCGCTCGAAGCGCGTATCGCGGCGAACCCCGCCGATC
TCGACGCACGGTTCGACCTCGCGCAGAGCCTGATCGCGCGACGCGCGTACGAAGGCGCGCTCGAGCAGCTGCTGGAAATC
GTGTTGCGCGACCGCGCGTATGGCGACGACCTCGGCCGCCGCACGATGCTGTCGGTGTTCGAGATGGCGGGCGACAGCCC
CGAGCTCGTCGCCGCGTGGCGGCGCAAGCTGAGCATGGCGCTCAACTGA

Upstream 100 bases:

>100_bases
CCCGGCGAAACCGAATGGATTCCGCTGCCCGCAGCGAAGCCGCGTTGAAAAAGGCGCGCACCGCCCCCATCCTCACGACA
TTCGACTGGAAGCGAACGAC

Downstream 100 bases:

>100_bases
CGAACGGGCGGTCGGGCCGCAATGGCCCGGCTGCCGCGCCATCGCGCGCGCCGGATCTGCCGCGCCGCGGCATCGCAGCG
CGCTGCTGCGCGTCGATCGC

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEADYQGRWKLVKVNVDENQELAAHFQTRSIPHVIAFA
DGRPVDQFIGVLPEGQLRAFLDRLLPAPEEAERRAAQYAIAESRYDDALTHLEAALALNPGFDDARLDLIELLLANNQVD
AARTEAERLSPQTVQGADPRYQAIKTRFDALDATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGALEQLLEI
VLRDRAYGDDLGRRTMLSVFEMAGDSPELVAAWRRKLSMALN

Sequences:

>Translated_282_residues
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEADYQGRWKLVKVNVDENQELAAHFQTRSIPHVIAFA
DGRPVDQFIGVLPEGQLRAFLDRLLPAPEEAERRAAQYAIAESRYDDALTHLEAALALNPGFDDARLDLIELLLANNQVD
AARTEAERLSPQTVQGADPRYQAIKTRFDALDATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGALEQLLEI
VLRDRAYGDDLGRRTMLSVFEMAGDSPELVAAWRRKLSMALN
>Mature_282_residues
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEADYQGRWKLVKVNVDENQELAAHFQTRSIPHVIAFA
DGRPVDQFIGVLPEGQLRAFLDRLLPAPEEAERRAAQYAIAESRYDDALTHLEAALALNPGFDDARLDLIELLLANNQVD
AARTEAERLSPQTVQGADPRYQAIKTRFDALDATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGALEQLLEI
VLRDRAYGDDLGRRTMLSVFEMAGDSPELVAAWRRKLSMALN

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=98, Percent_Identity=42.8571428571429, Blast_Score=94, Evalue=1e-19,
Organism=Escherichia coli, GI87081747, Length=268, Percent_Identity=35.0746268656716, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082331, Length=96, Percent_Identity=41.6666666666667, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788936, Length=88, Percent_Identity=39.7727272727273, Blast_Score=89, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI212646193, Length=100, Percent_Identity=44, Blast_Score=87, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6321648, Length=85, Percent_Identity=37.6470588235294, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28573567, Length=105, Percent_Identity=38.0952380952381, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24664269, Length=85, Percent_Identity=40, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24639826, Length=73, Percent_Identity=38.3561643835616, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639068, Length=96, Percent_Identity=37.5, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358065, Length=94, Percent_Identity=36.1702127659575, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31281; Mature: 31281

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEADYQGRWKLVKVNVDE
CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
NQELAAHFQTRSIPHVIAFADGRPVDQFIGVLPEGQLRAFLDRLLPAPEEAERRAAQYAI
CHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
AESRYDDALTHLEAALALNPGFDDARLDLIELLLANNQVDAARTEAERLSPQTVQGADPR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHH
YQAIKTRFDALDATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGALEQLLEI
HHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRDRAYGDDLGRRTMLSVFEMAGDSPELVAAWRRKLSMALN
HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEADYQGRWKLVKVNVDE
CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
NQELAAHFQTRSIPHVIAFADGRPVDQFIGVLPEGQLRAFLDRLLPAPEEAERRAAQYAI
CHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
AESRYDDALTHLEAALALNPGFDDARLDLIELLLANNQVDAARTEAERLSPQTVQGADPR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHH
YQAIKTRFDALDATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGALEQLLEI
HHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRDRAYGDDLGRRTMLSVFEMAGDSPELVAAWRRKLSMALN
HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]