| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115352577
Identifier: 115352577
GI number: 115352577
Start: 2783390
End: 2784547
Strand: Direct
Name: 115352577
Synonym: Bamb_2526
Alternate gene names: NA
Gene position: 2783390-2784547 (Clockwise)
Preceding gene: 115352576
Following gene: 115352579
Centisome position: 78.26
GC content: 69.95
Gene sequence:
>1158_bases ATGACGCTTCCCGCCCTGTTGCGCCGCGCCGCCGGCGCCGCCTTCGTGCTCGCGTGCACGGCCGCGCATGCCGACCTGAA GGTCGGCGTCGACCTGTCGTCCACCGGGCCGGCCGCCGCGATCGGCATCACCAGCAAGAACGCGATCCTGATGTGGCCGA AGACGATCGCCGGGCAGCCGGTGCAGGTGACGGTGCTCGACGACGCGTCGGACCCGGGCACCGCCGTGCGCAACATCCGC AAGCTGGTCGACGAGGATCACGTCGACGTCGTGGTCGGGCCGAACATCACGCCGGCCGCGCTCGCGGCGCTCGACGCGGT GGCGGCCGCCCAGACGCCGATGATCACGCTGGTCGGCTCCGGCGCGATCGTCGAGCCGCAGGAAGGCGCGCGGACCTGGG CGTTCAAGATGGCGCAGAGCGACAGCGCGATGGCTGACGTAATGACGCGCTACATGGCCAATCACGGCGTGAAGACGGTC GGCTTCATCGGCTTCGCGGACAGCTACGGCGACAGCTGGCTGAACGAATTCACGCGCTTCGCGCAAGTGCGCAAGATTCG CGTGATCGCGACCGAGCGCTTCAACCGCACCGACGCGAGCGTGACCGGCCAGGCGCTGAAGCTGATCGCGGCGAAGCCCG ACGCGATCCTGGTCGCCGGCTCGGGCACGCCGGCCGTGCTGCCGCAACGCACGTTGATCGAGCGCGGCTACAAGGGCGCG ATCTATCAGACGCACGGGATCGCGACGCCCGAGTTCATCAAGCTCGGCGGCAAGGACGTCGACGGGACGCTGTTCCCGAC GCAGCCGGTCGTCGTCGCACGCACGTTGCCCGCCGACCATCCGGCGCGCAAGGCGGCGCTCGCGTTCGTCGACGCCTATG AAGCGAAATACGGCGCCGGCACCGTCACGCAGTTCGCGGGCGACGCGGCCGGCGTGTACCCGCGCCTGGCGGACGCGGTC GGCCGCGCGCTGAAGACCGCGCAGCCGGGCACGCCGGCCTTCCGCGCGGCGCTGCGACGCGAACTCGAACGCGCGAACGA GCTCGTCGTGCCGAACGGCGTCGTCAATACCAGCGACAAGGATCACGTCGGGCTCGATCAGCGCGCGAGCGTGATGGGAA TCGTCAAGCAGGGCCGGTTCGTCTATCTCAGCCAGTAA
Upstream 100 bases:
>100_bases ACACCTTGGGGCGGCCGGCGTTTTCTCGAAGCGGCGTGTACGTGTATAACCACAGGGGCGCATATCGCGCCCCTTTTCGT TGCCCGACGGAGATTCCCGC
Downstream 100 bases:
>100_bases CGCGCGAACGGGGCGCCGCGCGGCTTGCCCCCCGCCCCGTTTTCCGCCATAATCCGCAGTTCGCCGCGCGCAACTGCAGC GCGGCCAGGATCAAAAAGCC
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: Amino Acid ABC Transporter Periplasmic Protein; Branched-Chain Amino Acid ABC Transporter; Amino Acid ABC Transporter; Branched-Chain Amino Acid Transporter
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MTLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASDPGTAVRNIR KLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTV GFIGFADSYGDSWLNEFTRFAQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGA IYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAGTVTQFAGDAAGVYPRLADAV GRALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ
Sequences:
>Translated_385_residues MTLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASDPGTAVRNIR KLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTV GFIGFADSYGDSWLNEFTRFAQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGA IYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAGTVTQFAGDAAGVYPRLADAV GRALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ >Mature_384_residues TLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASDPGTAVRNIRK LVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVG FIGFADSYGDSWLNEFTRFAQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGAI YQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAGTVTQFAGDAAGVYPRLADAVG RALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ
Specific function: Unknown
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40481; Mature: 40350
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQP CCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEECCHHHCCCC VQVTVLDDASDPGTAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGS EEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC GAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRF CCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHCHHHHHHHHHH AQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGA HHHHHEEEEEECCCCCCCCHHHHHHHEEEEECCCEEEEECCCCCCCCCCHHHHHCCCCCC IYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAG EEEECCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC TVTQFAGDAAGVYPRLADAVGRALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDK CHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCC DHVGLDQRASVMGIVKQGRFVYLSQ CCCCCCHHHHHHHHHHCCCEEEEEC >Mature Secondary Structure TLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQP CHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEECCHHHCCCC VQVTVLDDASDPGTAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGS EEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC GAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRF CCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHCHHHHHHHHHH AQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGA HHHHHEEEEEECCCCCCCCHHHHHHHEEEEECCCEEEEECCCCCCCCCCHHHHHCCCCCC IYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAG EEEECCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC TVTQFAGDAAGVYPRLADAVGRALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDK CHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCC DHVGLDQRASVMGIVKQGRFVYLSQ CCCCCCHHHHHHHHHHCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA