The gene/protein map for NC_008390 is currently unavailable.
Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115352577

Identifier: 115352577

GI number: 115352577

Start: 2783390

End: 2784547

Strand: Direct

Name: 115352577

Synonym: Bamb_2526

Alternate gene names: NA

Gene position: 2783390-2784547 (Clockwise)

Preceding gene: 115352576

Following gene: 115352579

Centisome position: 78.26

GC content: 69.95

Gene sequence:

>1158_bases
ATGACGCTTCCCGCCCTGTTGCGCCGCGCCGCCGGCGCCGCCTTCGTGCTCGCGTGCACGGCCGCGCATGCCGACCTGAA
GGTCGGCGTCGACCTGTCGTCCACCGGGCCGGCCGCCGCGATCGGCATCACCAGCAAGAACGCGATCCTGATGTGGCCGA
AGACGATCGCCGGGCAGCCGGTGCAGGTGACGGTGCTCGACGACGCGTCGGACCCGGGCACCGCCGTGCGCAACATCCGC
AAGCTGGTCGACGAGGATCACGTCGACGTCGTGGTCGGGCCGAACATCACGCCGGCCGCGCTCGCGGCGCTCGACGCGGT
GGCGGCCGCCCAGACGCCGATGATCACGCTGGTCGGCTCCGGCGCGATCGTCGAGCCGCAGGAAGGCGCGCGGACCTGGG
CGTTCAAGATGGCGCAGAGCGACAGCGCGATGGCTGACGTAATGACGCGCTACATGGCCAATCACGGCGTGAAGACGGTC
GGCTTCATCGGCTTCGCGGACAGCTACGGCGACAGCTGGCTGAACGAATTCACGCGCTTCGCGCAAGTGCGCAAGATTCG
CGTGATCGCGACCGAGCGCTTCAACCGCACCGACGCGAGCGTGACCGGCCAGGCGCTGAAGCTGATCGCGGCGAAGCCCG
ACGCGATCCTGGTCGCCGGCTCGGGCACGCCGGCCGTGCTGCCGCAACGCACGTTGATCGAGCGCGGCTACAAGGGCGCG
ATCTATCAGACGCACGGGATCGCGACGCCCGAGTTCATCAAGCTCGGCGGCAAGGACGTCGACGGGACGCTGTTCCCGAC
GCAGCCGGTCGTCGTCGCACGCACGTTGCCCGCCGACCATCCGGCGCGCAAGGCGGCGCTCGCGTTCGTCGACGCCTATG
AAGCGAAATACGGCGCCGGCACCGTCACGCAGTTCGCGGGCGACGCGGCCGGCGTGTACCCGCGCCTGGCGGACGCGGTC
GGCCGCGCGCTGAAGACCGCGCAGCCGGGCACGCCGGCCTTCCGCGCGGCGCTGCGACGCGAACTCGAACGCGCGAACGA
GCTCGTCGTGCCGAACGGCGTCGTCAATACCAGCGACAAGGATCACGTCGGGCTCGATCAGCGCGCGAGCGTGATGGGAA
TCGTCAAGCAGGGCCGGTTCGTCTATCTCAGCCAGTAA

Upstream 100 bases:

>100_bases
ACACCTTGGGGCGGCCGGCGTTTTCTCGAAGCGGCGTGTACGTGTATAACCACAGGGGCGCATATCGCGCCCCTTTTCGT
TGCCCGACGGAGATTCCCGC

Downstream 100 bases:

>100_bases
CGCGCGAACGGGGCGCCGCGCGGCTTGCCCCCCGCCCCGTTTTCCGCCATAATCCGCAGTTCGCCGCGCGCAACTGCAGC
GCGGCCAGGATCAAAAAGCC

Product: extracellular ligand-binding receptor

Products: NA

Alternate protein names: Amino Acid ABC Transporter Periplasmic Protein; Branched-Chain Amino Acid ABC Transporter; Amino Acid ABC Transporter; Branched-Chain Amino Acid Transporter

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MTLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASDPGTAVRNIR
KLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTV
GFIGFADSYGDSWLNEFTRFAQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGA
IYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAGTVTQFAGDAAGVYPRLADAV
GRALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ

Sequences:

>Translated_385_residues
MTLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASDPGTAVRNIR
KLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTV
GFIGFADSYGDSWLNEFTRFAQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGA
IYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAGTVTQFAGDAAGVYPRLADAV
GRALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ
>Mature_384_residues
TLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASDPGTAVRNIRK
LVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVG
FIGFADSYGDSWLNEFTRFAQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGAI
YQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAGTVTQFAGDAAGVYPRLADAVG
RALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ

Specific function: Unknown

COG id: COG0683

COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40481; Mature: 40350

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQP
CCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEECCHHHCCCC
VQVTVLDDASDPGTAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGS
EEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
GAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRF
CCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHCHHHHHHHHHH
AQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGA
HHHHHEEEEEECCCCCCCCHHHHHHHEEEEECCCEEEEECCCCCCCCCCHHHHHCCCCCC
IYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAG
EEEECCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
TVTQFAGDAAGVYPRLADAVGRALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDK
CHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCC
DHVGLDQRASVMGIVKQGRFVYLSQ
CCCCCCHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure 
TLPALLRRAAGAAFVLACTAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQP
CHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEECCHHHCCCC
VQVTVLDDASDPGTAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGS
EEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
GAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRF
CCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHCHHHHHHHHHH
AQVRKIRVIATERFNRTDASVTGQALKLIAAKPDAILVAGSGTPAVLPQRTLIERGYKGA
HHHHHEEEEEECCCCCCCCHHHHHHHEEEEECCCEEEEECCCCCCCCCCHHHHHCCCCCC
IYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARKAALAFVDAYEAKYGAG
EEEECCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
TVTQFAGDAAGVYPRLADAVGRALKTAQPGTPAFRAALRRELERANELVVPNGVVNTSDK
CHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCC
DHVGLDQRASVMGIVKQGRFVYLSQ
CCCCCCHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA