| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is ygfF [C]
Identifier: 115352579
GI number: 115352579
Start: 2786076
End: 2786813
Strand: Direct
Name: ygfF [C]
Synonym: Bamb_2528
Alternate gene names: 115352579
Gene position: 2786076-2786813 (Clockwise)
Preceding gene: 115352577
Following gene: 115352580
Centisome position: 78.34
GC content: 70.73
Gene sequence:
>738_bases ATGAACGCATCGAAACAGGTCGCCCTCGTCACGGGCTCGTCGCGCGGCATCGGCGCGGAAATCGCCCGCCGCCTCGCCCG GGACGGCTTCCGGGTCGTCGTGAACTACGCGGGCGGCGCCGGCCCGGCGCGCGAAGTGGTCGACGCGATCGCCGCGAACG GCGGCGAGGCCATCGCGGTACAGGCGGACATCGCCGACCCGGCGGCGGTGGCCGCGCTGTTCGATGCGGCCGAGCAGGCA TTCGGACACATCGATGTGGTCGTCAACAGCGCGGGTGTGATGAAGCTCGGCGCGATCGCCGACTACGACGACACCACGTT CGACCAGACCGTCGCGATCAACCTCAAAGGCACCTTCAACGTCAGCCGCGAGGCGGCAAAGCGCGTGCGCCACGGCGGCC GCATCGTCAACCTGTCGTCGACGATGGTGGGCGTGCGTCTGCCCACCTACGGCGTGTACGTTGCGACCAAGGCAGCCGTC GAGGGACTGACGCAGGTCCTCGCGCAGGAAATGCGCGGCCGCGGCATCAGCGTGAACGCCGTCGCGCCGGGGCCGGTCGC GACCGAGCTGTTCCTGGAGGGCAAGAGCCCCGAGCAGGTCGATCGCCTGGCGAAGATGAACCCGCTCGAGCGGCTGGGCC AGCCCGCGGACATCGCCGGCGTCGTCGCGTTCCTCGCCGGCCCCGACGGCGCGTGGGTCAACGGCCAGATCCTGCGCGCC AACGGCGGCATGTGCTGA
Upstream 100 bases:
>100_bases ATTCTTGATCTGATCATTATTCATTATTTTTATTGACCGAGGAAGCCTACATTAGTCCTGTCGCCGGATCGCACGGCACT CACGAACCAAGGAGCAGGAC
Downstream 100 bases:
>100_bases CCGACGCAGGAACCGCGCACACCAGACTAGGGCCGCCCGCCGGGGCCGCCCCACCCGCTTGCAGGAGATCGATCATGAAG GAAGTCATTCTCGTCACCGG
Product: short-chain dehydrogenase/reductase SDR
Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+
Alternate protein names: ORFC [H]
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MNASKQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIAANGGEAIAVQADIADPAAVAALFDAAEQA FGHIDVVVNSAGVMKLGAIADYDDTTFDQTVAINLKGTFNVSREAAKRVRHGGRIVNLSSTMVGVRLPTYGVYVATKAAV EGLTQVLAQEMRGRGISVNAVAPGPVATELFLEGKSPEQVDRLAKMNPLERLGQPADIAGVVAFLAGPDGAWVNGQILRA NGGMC
Sequences:
>Translated_245_residues MNASKQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIAANGGEAIAVQADIADPAAVAALFDAAEQA FGHIDVVVNSAGVMKLGAIADYDDTTFDQTVAINLKGTFNVSREAAKRVRHGGRIVNLSSTMVGVRLPTYGVYVATKAAV EGLTQVLAQEMRGRGISVNAVAPGPVATELFLEGKSPEQVDRLAKMNPLERLGQPADIAGVVAFLAGPDGAWVNGQILRA NGGMC >Mature_245_residues MNASKQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIAANGGEAIAVQADIADPAAVAALFDAAEQA FGHIDVVVNSAGVMKLGAIADYDDTTFDQTVAINLKGTFNVSREAAKRVRHGGRIVNLSSTMVGVRLPTYGVYVATKAAV EGLTQVLAQEMRGRGISVNAVAPGPVATELFLEGKSPEQVDRLAKMNPLERLGQPADIAGVVAFLAGPDGAWVNGQILRA NGGMC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=36, Blast_Score=117, Evalue=8e-27, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=33.0645161290323, Blast_Score=112, Evalue=2e-25, Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=34.6774193548387, Blast_Score=107, Evalue=8e-24, Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=32.2175732217573, Blast_Score=101, Evalue=5e-22, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=30.6122448979592, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=29.1828793774319, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=28.0632411067194, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI4758504, Length=260, Percent_Identity=30, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI109715829, Length=243, Percent_Identity=29.2181069958848, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4504505, Length=217, Percent_Identity=33.1797235023041, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=29.8969072164948, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=32.6315789473684, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=27.9835390946502, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI40254986, Length=186, Percent_Identity=28.494623655914, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=27.319587628866, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI223718074, Length=221, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI31542939, Length=254, Percent_Identity=27.1653543307087, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=32.0652173913043, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI66933014, Length=169, Percent_Identity=28.4023668639053, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI44680136, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI44680133, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI17738292, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI166795268, Length=208, Percent_Identity=29.3269230769231, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI7657478, Length=215, Percent_Identity=32.5581395348837, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=26.5625, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4503301, Length=206, Percent_Identity=25.2427184466019, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4502601, Length=242, Percent_Identity=28.099173553719, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI209862901, Length=253, Percent_Identity=29.2490118577075, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI19923983, Length=253, Percent_Identity=29.2490118577075, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI83715985, Length=260, Percent_Identity=28.4615384615385, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI4502599, Length=169, Percent_Identity=32.5443786982249, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=36.9918699186992, Blast_Score=138, Evalue=4e-34, Organism=Escherichia coli, GI87082100, Length=248, Percent_Identity=36.6935483870968, Blast_Score=129, Evalue=1e-31, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=34.0080971659919, Blast_Score=127, Evalue=7e-31, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=33.2, Blast_Score=123, Evalue=9e-30, Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=31.8181818181818, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=34.7280334728033, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=32.9218106995885, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1789378, Length=239, Percent_Identity=32.2175732217573, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=33.8842975206612, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1790717, Length=239, Percent_Identity=29.2887029288703, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=31.7647058823529, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1786812, Length=194, Percent_Identity=28.8659793814433, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786701, Length=232, Percent_Identity=29.7413793103448, Blast_Score=72, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=30.4878048780488, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=32.6612903225806, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17536025, Length=246, Percent_Identity=30.0813008130081, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17561272, Length=201, Percent_Identity=31.3432835820896, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17536651, Length=246, Percent_Identity=30.0813008130081, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=30.5343511450382, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=30.3846153846154, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=28, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=31.0204081632653, Blast_Score=97, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=29.2682926829268, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=30.6513409961686, Blast_Score=95, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=29.9595141700405, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=29.6153846153846, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=32.183908045977, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI115534694, Length=240, Percent_Identity=29.1666666666667, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI72000259, Length=250, Percent_Identity=29.6, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=30.2681992337165, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=31.2169312169312, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=31.8181818181818, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=29.0697674418605, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=28.8973384030418, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17544670, Length=243, Percent_Identity=27.5720164609054, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538182, Length=264, Percent_Identity=29.9242424242424, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=30.5343511450382, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17562990, Length=251, Percent_Identity=27.8884462151394, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=30.0751879699248, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=27.2373540856031, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17558628, Length=189, Percent_Identity=31.2169312169312, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508651, Length=248, Percent_Identity=27.4193548387097, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=29.3233082706767, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=32.2916666666667, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71997099, Length=203, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567345, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=230, Percent_Identity=29.5652173913043, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6324126, Length=170, Percent_Identity=33.5294117647059, Blast_Score=75, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=250, Percent_Identity=29.2, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322067, Length=197, Percent_Identity=29.4416243654822, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=35.1020408163265, Blast_Score=117, Evalue=6e-27, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=33.4661354581673, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=31.0483870967742, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=31.8897637795276, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=31.6205533596838, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=29.4117647058824, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI21357673, Length=187, Percent_Identity=33.6898395721925, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24644337, Length=203, Percent_Identity=30.5418719211823, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=28.099173553719, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=29.9610894941634, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24641232, Length=251, Percent_Identity=30.2788844621514, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24648944, Length=250, Percent_Identity=32, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=30.4568527918782, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI116007234, Length=202, Percent_Identity=29.7029702970297, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI18859837, Length=236, Percent_Identity=30.9322033898305, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=28.0632411067194, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24663911, Length=232, Percent_Identity=28.448275862069, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI21355631, Length=174, Percent_Identity=28.735632183908, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221331218, Length=225, Percent_Identity=29.3333333333333, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24665243, Length=223, Percent_Identity=29.5964125560538, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007238, Length=178, Percent_Identity=30.8988764044944, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221331216, Length=233, Percent_Identity=29.1845493562232, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648693, Length=207, Percent_Identity=28.9855072463768, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21355889, Length=207, Percent_Identity=28.9855072463768, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24665247, Length=223, Percent_Identity=29.5964125560538, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI116007232, Length=179, Percent_Identity=29.608938547486, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571387, Length=250, Percent_Identity=26.8, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100
Molecular weight: Translated: 25224; Mature: 25224
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNASKQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIAANGGEAIAV CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEE QADIADPAAVAALFDAAEQAFGHIDVVVNSAGVMKLGAIADYDDTTFDQTVAINLKGTFN EECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEECCEECCCCCCCCCEEEEEEEECCC VSREAAKRVRHGGRIVNLSSTMVGVRLPTYGVYVATKAAVEGLTQVLAQEMRGRGISVNA CCHHHHHHHHCCCEEEEECCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEE VAPGPVATELFLEGKSPEQVDRLAKMNPLERLGQPADIAGVVAFLAGPDGAWVNGQILRA ECCCCCEEEEEECCCCHHHHHHHHHCCHHHHCCCCCHHHHHHHEEECCCCCEECCEEEEC NGGMC CCCCC >Mature Secondary Structure MNASKQVALVTGSSRGIGAEIARRLARDGFRVVVNYAGGAGPAREVVDAIAANGGEAIAV CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEE QADIADPAAVAALFDAAEQAFGHIDVVVNSAGVMKLGAIADYDDTTFDQTVAINLKGTFN EECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEECCEECCCCCCCCCEEEEEEEECCC VSREAAKRVRHGGRIVNLSSTMVGVRLPTYGVYVATKAAVEGLTQVLAQEMRGRGISVNA CCHHHHHHHHCCCEEEEECCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEE VAPGPVATELFLEGKSPEQVDRLAKMNPLERLGQPADIAGVVAFLAGPDGAWVNGQILRA ECCCCCEEEEEECCCCHHHHHHHHHCCHHHHCCCCCHHHHHHHEEECCCCCEECCEEEEC NGGMC CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+
Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8868443 [H]