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The map label for this gene is intB [H]

Identifier: 115352451

GI number: 115352451

Start: 2649273

End: 2650487

Strand: Direct

Name: intB [H]

Synonym: Bamb_2400

Alternate gene names: 115352451

Gene position: 2649273-2650487 (Clockwise)

Preceding gene: 115352450

Following gene: 115352452

Centisome position: 74.49

GC content: 60.49

Gene sequence:

>1215_bases
ATGGCGCTCACAGACCTCAAGGTCCGCACAGCCAAGCCAGCGGAGAAGCAGCAGAAGCTCTATGACGGCGGCGGACTGCT
GCTATTGATAACGCCGGCCGGCGGCAAGCGATGGGTTCTCAAGTACCGCGTCGACAGTAAAGAAAAAAGCTTGGCGCTCG
GCACGTATCCGGATGTCTCGCTCGCCGAGGCACGCGCTCGCCGCGATAATGCGCGCGAAAAACTCGCCGCAGGTGTCGAC
CCAAGCGAAGCCAAGAAAGCCGACAAGCGCGCTGCGCAATTGGCCGCCGCCAGTTCGTTCGAAATCGTCGCGCGTGAATG
GTTTGACACTCAGCGTGGTGGATGGTCTGAGGTGTACGCAGGCAAGGTCATCAGCTGCCTCGAAGTCGACGTGTTCCCTC
GGCTCGGCGCTCGCCCTATCGCGAGCATCGATGCCCCCGAGCTGCTGGCGATCATCCGCACCGTCGAATCTCGCGGCGTT
CGCGAGACTGCCAAGCGGGTGCTGCAGCGTTCGCGTGCCGTGTTTCAGTACGGCATCATGACCGGCCGCTGTGCTCGAAA
CCCGGCCGCCGACATCGACGCGGAAACGGTATTGAAGAAGAGCACCGGCGTACAGCATATGGCGCGAGTGAAAGCGACCG
AGATCCCGCGACTCATGCGCGACATCGACGAATATTCCGGCGATCTAGTCACGCGACTCGCGTTGCGGTTCATGGCATTG
ACGTTCGTGCGAACAAAGGAAATGATCCAGGCCGAATGGCCAGAGATCGATGTCGATGCTGCAGAGTGGCGAGTGCCAGC
AGAGCGCATGAAAATGCGCGATCCACACATTGTGCCCCTTTCTCGGCAGGCTCTCGGGGTGCTCGCCCAGCTCCGCGAGA
TCAACGGCCAGCAACGCTTCGTTTTCTACAGCGTGCAAGGCCGAAGCCACATTTCGAATAACACGATGCTGTACGCCCTG
TATCGGATGGGCTACAAGTCACGTATGACTGGGCACGGGTTCCGCGGCCTCGCTGCGACAGCCCTGCGCGAACTGGGATA
CAGCCGCGACGTCGTCGAGCGTCAGATGGCGCATGCTGAACGCAACCAGGTCACTGCCGCCTACGTTCACGCAGAGTATC
TGCCTGAGCGGCGCGAGATGATGCAGCACTGGGCAGATCGTCTCGATGAATTACGTGCGGGTGCAGCAATCCTTTCATTT
CCGTCTCTTGCATAG

Upstream 100 bases:

>100_bases
CTTCCACCAGCGACCACCAGTGGAAACAACCCCCGACTAGGGGTTGTTTTGGGGGCTTCGCAAAACACCCCCCTTCAGAC
AACCCCCGAGGCACCAGCAC

Downstream 100 bases:

>100_bases
CGAATGCGTGTACAACAACACACTTCCACGCCTAAAGGACTGGTGACATGACAGAAACGACCTTTGCAGAACCGGGTGAC
GATCTGCCGCCCCACCTATG

Product: phage integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MALTDLKVRTAKPAEKQQKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDVSLAEARARRDNAREKLAAGVD
PSEAKKADKRAAQLAAASSFEIVAREWFDTQRGGWSEVYAGKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGV
RETAKRVLQRSRAVFQYGIMTGRCARNPAADIDAETVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLALRFMAL
TFVRTKEMIQAEWPEIDVDAAEWRVPAERMKMRDPHIVPLSRQALGVLAQLREINGQQRFVFYSVQGRSHISNNTMLYAL
YRMGYKSRMTGHGFRGLAATALRELGYSRDVVERQMAHAERNQVTAAYVHAEYLPERREMMQHWADRLDELRAGAAILSF
PSLA

Sequences:

>Translated_404_residues
MALTDLKVRTAKPAEKQQKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDVSLAEARARRDNAREKLAAGVD
PSEAKKADKRAAQLAAASSFEIVAREWFDTQRGGWSEVYAGKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGV
RETAKRVLQRSRAVFQYGIMTGRCARNPAADIDAETVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLALRFMAL
TFVRTKEMIQAEWPEIDVDAAEWRVPAERMKMRDPHIVPLSRQALGVLAQLREINGQQRFVFYSVQGRSHISNNTMLYAL
YRMGYKSRMTGHGFRGLAATALRELGYSRDVVERQMAHAERNQVTAAYVHAEYLPERREMMQHWADRLDELRAGAAILSF
PSLA
>Mature_403_residues
ALTDLKVRTAKPAEKQQKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDVSLAEARARRDNAREKLAAGVDP
SEAKKADKRAAQLAAASSFEIVAREWFDTQRGGWSEVYAGKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGVR
ETAKRVLQRSRAVFQYGIMTGRCARNPAADIDAETVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLALRFMALT
FVRTKEMIQAEWPEIDVDAAEWRVPAERMKMRDPHIVPLSRQALGVLAQLREINGQQRFVFYSVQGRSHISNNTMLYALY
RMGYKSRMTGHGFRGLAATALRELGYSRDVVERQMAHAERNQVTAAYVHAEYLPERREMMQHWADRLDELRAGAAILSFP
SLA

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=402, Percent_Identity=36.0696517412935, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI145693166, Length=396, Percent_Identity=39.6464646464646, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1788690, Length=391, Percent_Identity=36.0613810741688, Blast_Score=245, Evalue=5e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45403; Mature: 45272

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTDLKVRTAKPAEKQQKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDVS
CCCCCCEEECCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCEEECCCCCCH
LAEARARRDNAREKLAAGVDPSEAKKADKRAAQLAAASSFEIVAREWFDTQRGGWSEVYA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHH
GKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGVRETAKRVLQRSRAVFQYGIM
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
TGRCARNPAADIDAETVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLALRFMAL
CCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFVRTKEMIQAEWPEIDVDAAEWRVPAERMKMRDPHIVPLSRQALGVLAQLREINGQQRF
HHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
VFYSVQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATALRELGYSRDVVERQMAHAE
EEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
RNQVTAAYVHAEYLPERREMMQHWADRLDELRAGAAILSFPSLA
HHCHHHEEHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCC
>Mature Secondary Structure 
ALTDLKVRTAKPAEKQQKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDVS
CCCCCEEECCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCEEECCCCCCH
LAEARARRDNAREKLAAGVDPSEAKKADKRAAQLAAASSFEIVAREWFDTQRGGWSEVYA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHH
GKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGVRETAKRVLQRSRAVFQYGIM
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
TGRCARNPAADIDAETVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLALRFMAL
CCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFVRTKEMIQAEWPEIDVDAAEWRVPAERMKMRDPHIVPLSRQALGVLAQLREINGQQRF
HHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
VFYSVQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATALRELGYSRDVVERQMAHAE
EEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
RNQVTAAYVHAEYLPERREMMQHWADRLDELRAGAAILSFPSLA
HHCHHHEEHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]