| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352452
Identifier: 115352452
GI number: 115352452
Start: 2650535
End: 2651098
Strand: Direct
Name: 115352452
Synonym: Bamb_2401
Alternate gene names: NA
Gene position: 2650535-2651098 (Clockwise)
Preceding gene: 115352451
Following gene: 115352453
Centisome position: 74.53
GC content: 55.14
Gene sequence:
>564_bases ATGACAGAAACGACCTTTGCAGAACCGGGTGACGATCTGCCGCCCCACCTATGCCCGCTTTTTATCATGGCCGCTTATCC GTACATGCAAATCGAGGACCGGCAAATCTTTGCGGACGGCCTTGCACGACTCACGAACGCGCTGATTATTGCTGGCACGA AAGGCGAGTTAGCTGTCTTTCACCCAAAGACGCTACTGCCCTACGATGCTCATAACGCAGGGTTTGAGGACGAGCCGAGC CCGGTTACAGCAGACTGGGTCGCACGAATCAATGATGTACTCCATTGGTTCGTAGAGAAGAACATCGAGGCTGCAAAACC ACTCGTCGATACGATGGTGGCGCACGTCAAAATCGAGAAACCGATGTCTGTTGATCGGCGCACCCAAATGATGGAAGCGC TAGAGCGCAACGGCGGAAACAAGACAAAGACGGCTACCGAGTTCGGCATCAGCCGTCAGCGCCTCGCCCAGATAATCCAA CAGGGATCTGCCCAATCAATTGAGCGCAAGGGCCTTGCGGTTGTGCCGCATGACCCTTTCGGTGTGGCGCCCAAAGCCAA GTAG
Upstream 100 bases:
>100_bases TCGATGAATTACGTGCGGGTGCAGCAATCCTTTCATTTCCGTCTCTTGCATAGCGAATGCGTGTACAACAACACACTTCC ACGCCTAAAGGACTGGTGAC
Downstream 100 bases:
>100_bases CACCGTTATTTCTTGCTCCCCCCTAGCCGAAAGGGGGGCTTGCGACCGCCAAATGCACTCCTCTAACAACGCACAAGGAG TGCAATGTATGTCGACGCAA
Product: helix-turn-helix, Fis-type
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MTETTFAEPGDDLPPHLCPLFIMAAYPYMQIEDRQIFADGLARLTNALIIAGTKGELAVFHPKTLLPYDAHNAGFEDEPS PVTADWVARINDVLHWFVEKNIEAAKPLVDTMVAHVKIEKPMSVDRRTQMMEALERNGGNKTKTATEFGISRQRLAQIIQ QGSAQSIERKGLAVVPHDPFGVAPKAK
Sequences:
>Translated_187_residues MTETTFAEPGDDLPPHLCPLFIMAAYPYMQIEDRQIFADGLARLTNALIIAGTKGELAVFHPKTLLPYDAHNAGFEDEPS PVTADWVARINDVLHWFVEKNIEAAKPLVDTMVAHVKIEKPMSVDRRTQMMEALERNGGNKTKTATEFGISRQRLAQIIQ QGSAQSIERKGLAVVPHDPFGVAPKAK >Mature_186_residues TETTFAEPGDDLPPHLCPLFIMAAYPYMQIEDRQIFADGLARLTNALIIAGTKGELAVFHPKTLLPYDAHNAGFEDEPSP VTADWVARINDVLHWFVEKNIEAAKPLVDTMVAHVKIEKPMSVDRRTQMMEALERNGGNKTKTATEFGISRQRLAQIIQQ GSAQSIERKGLAVVPHDPFGVAPKAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20703; Mature: 20572
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETTFAEPGDDLPPHLCPLFIMAAYPYMQIEDRQIFADGLARLTNALIIAGTKGELAVF CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCEEEEECCCCCEEEE HPKTLLPYDAHNAGFEDEPSPVTADWVARINDVLHWFVEKNIEAAKPLVDTMVAHVKIEK CCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC PMSVDRRTQMMEALERNGGNKTKTATEFGISRQRLAQIIQQGSAQSIERKGLAVVPHDPF CCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHCCCEEECCCCC GVAPKAK CCCCCCC >Mature Secondary Structure TETTFAEPGDDLPPHLCPLFIMAAYPYMQIEDRQIFADGLARLTNALIIAGTKGELAVF CCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCEEEEECCCCCEEEE HPKTLLPYDAHNAGFEDEPSPVTADWVARINDVLHWFVEKNIEAAKPLVDTMVAHVKIEK CCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC PMSVDRRTQMMEALERNGGNKTKTATEFGISRQRLAQIIQQGSAQSIERKGLAVVPHDPF CCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHCCCEEECCCCC GVAPKAK CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA