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The map label for this gene is yciR [C]

Identifier: 115352441

GI number: 115352441

Start: 2635269

End: 2637608

Strand: Direct

Name: yciR [C]

Synonym: Bamb_2390

Alternate gene names: 115352441

Gene position: 2635269-2637608 (Clockwise)

Preceding gene: 115352440

Following gene: 115352442

Centisome position: 74.1

GC content: 66.62

Gene sequence:

>2340_bases
ATGAGCTCCGCCCGGTCCAACCACACGCCGCCGACCCGGCCGCTGCGCGCGCCGCGCAAATCGCGCCGGCGTGCGCTGTT
CGCGATCCCGTTGCTCGGGATGCTGGCGCTTGCGCTGCTGTGGGCGGTGATCATCGCGCGACTGTCGGTCGAAAAGGACA
GCGCGTACAAGGAAGCGGCGGCATCCGCCGCGATCCTGTCGTCCGCGCTCGAGCAGCACACCGTCAAGGCGATCCACCAG
GTCGACCAGATCACCCGCTTCGTCAAGTTCGAGTTCGAGAAATCGCCCGCGCACTTCAACCTCGCGAGCGCGGTCGAAAA
AGGCGTCGTGCCGAGCGACACGCTGATCCAGGTCTCGCTCGTGAACGCGAAGGGTATCCTGTTCGCGAACACGGCCGACA
TTCATCCGCAGCCGATCAACCTGTCGGACCGCGAACATTTCAAGGTCCATCTCGCGCACAACGACGACCGCCTGTACATC
AGCAAGCCGGTGTTCGGCCGCGTGTCGAGCCACTGGACGCTGCAGATGACGCGGCGGCTGAACAACCCGGACGGCAGCTT
CGCGGGCATCGTCGTGGTGTCGGAAGACCCGAGCTACTTCACGAACGACTTCTACAACAACGCGGCGATCGGCAAGGAAG
GCGTGATCGCCGTGGTGTCCGACACGGGCGCGGTGCTCGCGCGGCGCACCGGCTCGGTCAGCAACGCACCGGGTGCGTTC
TCCGCGTCGGGCGTGTACCCGATCGCCGAGCGCGTGACGGGCACGATCATCGACCCGATCGACGGCGTGACGCGCATCGT
GTCGTACCGCCACCTCGACGGCTACCCGCTCGCGGTGATGGTCGGGCTGTCGCAGACCGAGGAATTCGCGGACTACTCCC
ACACGCGCAACGTCTACCTGCTGATGACGAGCTTCATCACGCTCGCGATGCTCGCGTTCTTCAGCGTCGCGACGGGGCTG
ATCGGCAAGCTGCTGGGGCGCGAGCGCGAGATGACCCAGCTCGCCGAATACGACCTGCTCACCGGCCTCGCGAACCGCTA
CGCGACGCTGCGCGGGCTGCGCAACGACGTGTCGATGCCGGCCAGCCTGTCGCGGCTCGGCCTGCTGTTCATCGACCTCG
ACAACTTCAAGACCGTCAACGACACGCTCGGCCACAACGCCGGCGACATCGTGCTGCAGATGACCGCGTCGCGCCTGTCG
GATGCGGTCGGCGACGAAGGCTCGCTCGCGCGGATCGGCGGCGACGAGTTCGTGGTCGTGATGAAGGGCGACGACATCGA
ACGGCGCGCGGTGCGGCTCGCGGAGGCGATCATCCGGATGTTCGGCGAGCCGTTCGACGTGCGCGGCAGTTCGTTCGTGC
TGCACGCCAGCATCGGCATCGCGCTGCACAGCGTCGCGAACGAAAGCGAGATCGACCTGCTGAAGAAGGCCGACCTCGCG
ATGTACAGCGCGAAGGACGCCGGCAAGAACTGCTATCAGTTCTACGCGCCGCACCTGTCGCACCGCGCGGACCACCTGAT
GCGCTGGGAACAGCAGTTGCGCGTCGCGCTCGCCGAAGGGCAGCTGTTCCTCGCCTACCAGCCGAAGATCGACCTGACGC
ACCGCACGATCACCGGCTTCGAGGCGCTCGCGCGCTGGGATCACCCCGAGCACGGGATCATTTCCGCGAACGAATTCATT
TCGATCGCCGAATCGACGGGCCTGATCGTGCCGATCGGCGACTTCGTGATCCGCACCGCGTGCGAGCAGATCGCGCGCTG
GCGCGACGACGGCCACGACACGCTGACGCTCGCGATCAACATCTCGCCGGTGCAATTCTGGCGCGGCGACCTGATCGAGA
CGATTTCCCAGGCGCTGCAGGACACCGGCATCGACGCGAACCGGCTCGAGATCGAGATCACCGAGACCGCGATGATGGAA
TACCCGGAGCTCGTGTCCGAGAAGATCGTCGCGCTGAAGAAGCTCGGCATCCGGATCGCGCTCGACGATTTCGGCACCGG
CTATTCATCGCTGTCGTACCTGCACCGCTTCTCCGTCGACACGCTGAAGGTCGACCGCTCGTTCGTGCAGGCCATCCCGA
ACGATCGCAGCGTGTGCGTGATGGTGTCGTCGATCGTGCATCTCGCGCGCTCGCTCGGCCTGACGGTCGTCGTCGAGGGC
ACCGAGACCGAGGAGCAGATCGCGTGGCTGTCCGCGCTCGGCGAGATCGAGGCGCAGGGCTTCCTGTTCTCGCGCCCCGT
GCCGGCCGACGCGATTCCCGCGCTGATCGCACGCTTCGGCGTGCGCGGCGCCCGGCCGGACGTCCTCACGCACCGCGCGA
CCGGCAGCACGAGCGCCTGA

Upstream 100 bases:

>100_bases
GTTGCGCATCCCGCGAACGAACAGACGCCGGGGCGACCCCAACCATAGCCGGCCATCCCGACGAGGATGGCGCAAGCGAG
CAGGACGCCGCCCTTCTTCA

Downstream 100 bases:

>100_bases
GCCCGCCACCCGCGCGGCGCCTGCGCGGCACCCGTTGCGCGGACCACCGATCGTTTCGTTTTCCGATCCGATTGTTTAGT
CCATTTACTAGCGTTTTCGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 779; Mature: 778

Protein sequence:

>779_residues
MSSARSNHTPPTRPLRAPRKSRRRALFAIPLLGMLALALLWAVIIARLSVEKDSAYKEAAASAAILSSALEQHTVKAIHQ
VDQITRFVKFEFEKSPAHFNLASAVEKGVVPSDTLIQVSLVNAKGILFANTADIHPQPINLSDREHFKVHLAHNDDRLYI
SKPVFGRVSSHWTLQMTRRLNNPDGSFAGIVVVSEDPSYFTNDFYNNAAIGKEGVIAVVSDTGAVLARRTGSVSNAPGAF
SASGVYPIAERVTGTIIDPIDGVTRIVSYRHLDGYPLAVMVGLSQTEEFADYSHTRNVYLLMTSFITLAMLAFFSVATGL
IGKLLGREREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLS
DAVGDEGSLARIGGDEFVVVMKGDDIERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHSVANESEIDLLKKADLA
MYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGIISANEFI
SIAESTGLIVPIGDFVIRTACEQIARWRDDGHDTLTLAINISPVQFWRGDLIETISQALQDTGIDANRLEIEITETAMME
YPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKVDRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEG
TETEEQIAWLSALGEIEAQGFLFSRPVPADAIPALIARFGVRGARPDVLTHRATGSTSA

Sequences:

>Translated_779_residues
MSSARSNHTPPTRPLRAPRKSRRRALFAIPLLGMLALALLWAVIIARLSVEKDSAYKEAAASAAILSSALEQHTVKAIHQ
VDQITRFVKFEFEKSPAHFNLASAVEKGVVPSDTLIQVSLVNAKGILFANTADIHPQPINLSDREHFKVHLAHNDDRLYI
SKPVFGRVSSHWTLQMTRRLNNPDGSFAGIVVVSEDPSYFTNDFYNNAAIGKEGVIAVVSDTGAVLARRTGSVSNAPGAF
SASGVYPIAERVTGTIIDPIDGVTRIVSYRHLDGYPLAVMVGLSQTEEFADYSHTRNVYLLMTSFITLAMLAFFSVATGL
IGKLLGREREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLS
DAVGDEGSLARIGGDEFVVVMKGDDIERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHSVANESEIDLLKKADLA
MYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGIISANEFI
SIAESTGLIVPIGDFVIRTACEQIARWRDDGHDTLTLAINISPVQFWRGDLIETISQALQDTGIDANRLEIEITETAMME
YPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKVDRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEG
TETEEQIAWLSALGEIEAQGFLFSRPVPADAIPALIARFGVRGARPDVLTHRATGSTSA
>Mature_778_residues
SSARSNHTPPTRPLRAPRKSRRRALFAIPLLGMLALALLWAVIIARLSVEKDSAYKEAAASAAILSSALEQHTVKAIHQV
DQITRFVKFEFEKSPAHFNLASAVEKGVVPSDTLIQVSLVNAKGILFANTADIHPQPINLSDREHFKVHLAHNDDRLYIS
KPVFGRVSSHWTLQMTRRLNNPDGSFAGIVVVSEDPSYFTNDFYNNAAIGKEGVIAVVSDTGAVLARRTGSVSNAPGAFS
ASGVYPIAERVTGTIIDPIDGVTRIVSYRHLDGYPLAVMVGLSQTEEFADYSHTRNVYLLMTSFITLAMLAFFSVATGLI
GKLLGREREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSD
AVGDEGSLARIGGDEFVVVMKGDDIERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHSVANESEIDLLKKADLAM
YSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGIISANEFIS
IAESTGLIVPIGDFVIRTACEQIARWRDDGHDTLTLAINISPVQFWRGDLIETISQALQDTGIDANRLEIEITETAMMEY
PELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKVDRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGT
ETEEQIAWLSALGEIEAQGFLFSRPVPADAIPALIARFGVRGARPDVLTHRATGSTSA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=432, Percent_Identity=37.037037037037, Blast_Score=265, Evalue=1e-71,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=33.3333333333333, Blast_Score=236, Evalue=4e-63,
Organism=Escherichia coli, GI226510982, Length=387, Percent_Identity=29.1989664082687, Blast_Score=184, Evalue=2e-47,
Organism=Escherichia coli, GI1787055, Length=429, Percent_Identity=27.972027972028, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1790496, Length=258, Percent_Identity=34.1085271317829, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=35.7723577235772, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=34.7280334728033, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=33.75, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=34.6938775510204, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081980, Length=266, Percent_Identity=31.9548872180451, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=32.5102880658436, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI87082096, Length=237, Percent_Identity=30.8016877637131, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1788381, Length=396, Percent_Identity=25, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=35.9756097560976, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=198, Percent_Identity=31.3131313131313, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI87081977, Length=201, Percent_Identity=32.3383084577114, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI87082007, Length=233, Percent_Identity=26.6094420600858, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=30.4347826086957, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=34.1176470588235, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=33.1325301204819, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=26.7015706806283, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787410, Length=235, Percent_Identity=22.5531914893617, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 85418; Mature: 85286

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSARSNHTPPTRPLRAPRKSRRRALFAIPLLGMLALALLWAVIIARLSVEKDSAYKEAA
CCCCCCCCCCCCCCCCCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ASAAILSSALEQHTVKAIHQVDQITRFVKFEFEKSPAHFNLASAVEKGVVPSDTLIQVSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHHHCCCCCCCEEEEEE
VNAKGILFANTADIHPQPINLSDREHFKVHLAHNDDRLYISKPVFGRVSSHWTLQMTRRL
ECCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCEEEEEEHHC
NNPDGSFAGIVVVSEDPSYFTNDFYNNAAIGKEGVIAVVSDTGAVLARRTGSVSNAPGAF
CCCCCCEEEEEEEECCCCHHHHHCCCCCCCCCCCEEEEEECCCCEEHCCCCCCCCCCCCC
SASGVYPIAERVTGTIIDPIDGVTRIVSYRHLDGYPLAVMVGLSQTEEFADYSHTRNVYL
CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCHHH
LMTSFITLAMLAFFSVATGLIGKLLGREREMTQLAEYDLLTGLANRYATLRGLRNDVSMP
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGSLARIGGDEFVVV
CHHHHCEEEEEECCCCCCHHHHHCCCCCCEEEEEEHHHHHHHCCCCCCEEEECCCEEEEE
MKGDDIERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHSVANESEIDLLKKADLA
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHH
MYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGF
HEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
EALARWDHPEHGIISANEFISIAESTGLIVPIGDFVIRTACEQIARWRDDGHDTLTLAIN
HHHHHCCCCCCCEEEHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
ISPVQFWRGDLIETISQALQDTGIDANRLEIEITETAMMEYPELVSEKIVALKKLGIRIA
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
LDDFGTGYSSLSYLHRFSVDTLKVDRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEG
EECCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEC
TETEEQIAWLSALGEIEAQGFLFSRPVPADAIPALIARFGVRGARPDVLTHRATGSTSA
CCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
SSARSNHTPPTRPLRAPRKSRRRALFAIPLLGMLALALLWAVIIARLSVEKDSAYKEAA
CCCCCCCCCCCCCCCCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ASAAILSSALEQHTVKAIHQVDQITRFVKFEFEKSPAHFNLASAVEKGVVPSDTLIQVSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHHHCCCCCCCEEEEEE
VNAKGILFANTADIHPQPINLSDREHFKVHLAHNDDRLYISKPVFGRVSSHWTLQMTRRL
ECCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCEEEEEEHHC
NNPDGSFAGIVVVSEDPSYFTNDFYNNAAIGKEGVIAVVSDTGAVLARRTGSVSNAPGAF
CCCCCCEEEEEEEECCCCHHHHHCCCCCCCCCCCEEEEEECCCCEEHCCCCCCCCCCCCC
SASGVYPIAERVTGTIIDPIDGVTRIVSYRHLDGYPLAVMVGLSQTEEFADYSHTRNVYL
CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCHHH
LMTSFITLAMLAFFSVATGLIGKLLGREREMTQLAEYDLLTGLANRYATLRGLRNDVSMP
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGSLARIGGDEFVVV
CHHHHCEEEEEECCCCCCHHHHHCCCCCCEEEEEEHHHHHHHCCCCCCEEEECCCEEEEE
MKGDDIERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHSVANESEIDLLKKADLA
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHH
MYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGF
HEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
EALARWDHPEHGIISANEFISIAESTGLIVPIGDFVIRTACEQIARWRDDGHDTLTLAIN
HHHHHCCCCCCCEEEHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
ISPVQFWRGDLIETISQALQDTGIDANRLEIEITETAMMEYPELVSEKIVALKKLGIRIA
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
LDDFGTGYSSLSYLHRFSVDTLKVDRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEG
EECCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEC
TETEEQIAWLSALGEIEAQGFLFSRPVPADAIPALIARFGVRGARPDVLTHRATGSTSA
CCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]