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The map label for this gene is yddE [C]

Identifier: 115352440

GI number: 115352440

Start: 2634166

End: 2635047

Strand: Direct

Name: yddE [C]

Synonym: Bamb_2389

Alternate gene names: 115352440

Gene position: 2634166-2635047 (Clockwise)

Preceding gene: 115352439

Following gene: 115352441

Centisome position: 74.07

GC content: 71.66

Gene sequence:

>882_bases
ATGACTAGCCACGGCGTCCGTTTCAAGCAGGTCGACGTCTTCACGTCGGTACCGTTCAAGGGCAACCCGCTCGCGGTCGT
GTTCGACGCCGATTCGCTCGGCGACGACGACATGCTCGCGATCGCCCGCTGGACGAACCTGTCGGAAACGGCGTTCGTGT
GCACGCCGACCGATCTGGACGCCGATTACCGCGTCCGGATCTTCACGCCGGGCGGCGAACTGCCGTTCGCCGGCCACCCG
ACGCTCGGCACCGCGCACGCGTTCCTGGAAAGCGGCGCGCGACCGCGCACGCCGGGCGTGCTGATCCAGCAATGCGGCGT
CGGCCGGGTTGAGCTGCGCGAACTGGCCGACGGCTGGGCATTTGCCGCGCCGCCGGCTCGGTTCACGCCGCTCGACCGGG
CCGACTATCCGGTGCTGGCGGCCGCGTTGCGCAGCAATGCGATCGATCCGGACGCCGAACCGTGCGCGGTCGACAACGGC
GCGCCGTGGCTCGTCGTGCGGCTCACGTCGGTCGAAGCCTGCATCGGCCTCGCGCCCGATCCGGCCGCGCTCGGCGCCCT
CATCCACCGCTACGGCGCGCACGGGCTCGCGGCGTACGCGCCCCACCCCGACGACGGCCCCGCGACGTTCGAAATCCGCT
GCCTGATGACGGGCGACGGTTTCGGCACCGGCGAGGATCCCGCCACCGGCAGCGCAAACGCCGCGCTGGCCGAGCTGCTG
AGCCGCCAGCAGCGCCGCCCCGGCACGTCGTATACGGCCCGCCAGGGCACGGCGATCGGCCGCGCCGGCCGCATTGCCGT
TCGCTATGACGACGACGGCACGATCTGGATCGGCGGCAACGTCGTGACGGTCGTGGACGGCACGTTCCAGATGCCCGCCT
GA

Upstream 100 bases:

>100_bases
GCGCGTTCGGCGTTCGGCGTCGCGCAGATTCCGCTCGGCGCATGCGTCGAGATCGAGCTGATCGCCGAAGTCGCGTAACT
CACGTCACGCGATCGTCACG

Downstream 100 bases:

>100_bases
CGTTTCGTCGTTTCGCCACGTGCGATGGCCCGGCCGACGCCCTGAGGTTGCCCGTCTATCGCAAAAACGTTCCAGCCAGT
AATATCGGGCCTAATCCGTC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTSHGVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDDMLAIARWTNLSETAFVCTPTDLDADYRVRIFTPGGELPFAGHP
TLGTAHAFLESGARPRTPGVLIQQCGVGRVELRELADGWAFAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNG
APWLVVRLTSVEACIGLAPDPAALGALIHRYGAHGLAAYAPHPDDGPATFEIRCLMTGDGFGTGEDPATGSANAALAELL
SRQQRRPGTSYTARQGTAIGRAGRIAVRYDDDGTIWIGGNVVTVVDGTFQMPA

Sequences:

>Translated_293_residues
MTSHGVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDDMLAIARWTNLSETAFVCTPTDLDADYRVRIFTPGGELPFAGHP
TLGTAHAFLESGARPRTPGVLIQQCGVGRVELRELADGWAFAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNG
APWLVVRLTSVEACIGLAPDPAALGALIHRYGAHGLAAYAPHPDDGPATFEIRCLMTGDGFGTGEDPATGSANAALAELL
SRQQRRPGTSYTARQGTAIGRAGRIAVRYDDDGTIWIGGNVVTVVDGTFQMPA
>Mature_292_residues
TSHGVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDDMLAIARWTNLSETAFVCTPTDLDADYRVRIFTPGGELPFAGHPT
LGTAHAFLESGARPRTPGVLIQQCGVGRVELRELADGWAFAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNGA
PWLVVRLTSVEACIGLAPDPAALGALIHRYGAHGLAAYAPHPDDGPATFEIRCLMTGDGFGTGEDPATGSANAALAELLS
RQQRRPGTSYTARQGTAIGRAGRIAVRYDDDGTIWIGGNVVTVVDGTFQMPA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=267, Percent_Identity=29.5880149812734, Blast_Score=86, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6321818, Length=296, Percent_Identity=33.445945945946, Blast_Score=157, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30886; Mature: 30755

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSHGVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDDMLAIARWTNLSETAFVCTPTDLD
CCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCCCC
ADYRVRIFTPGGELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRVELRELADGWA
CCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHCCCE
FAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNGAPWLVVRLTSVEACIGLAPD
ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEEEEHHHHHCCCCC
PAALGALIHRYGAHGLAAYAPHPDDGPATFEIRCLMTGDGFGTGEDPATGSANAALAELL
HHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
SRQQRRPGTSYTARQGTAIGRAGRIAVRYDDDGTIWIGGNVVTVVDGTFQMPA
HHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCEEEEEECCEEECCC
>Mature Secondary Structure 
TSHGVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDDMLAIARWTNLSETAFVCTPTDLD
CCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCCCC
ADYRVRIFTPGGELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRVELRELADGWA
CCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHCCCE
FAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNGAPWLVVRLTSVEACIGLAPD
ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEEEEHHHHHCCCCC
PAALGALIHRYGAHGLAAYAPHPDDGPATFEIRCLMTGDGFGTGEDPATGSANAALAELL
HHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
SRQQRRPGTSYTARQGTAIGRAGRIAVRYDDDGTIWIGGNVVTVVDGTFQMPA
HHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]