| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115352413
Identifier: 115352413
GI number: 115352413
Start: 2607747
End: 2609582
Strand: Direct
Name: 115352413
Synonym: Bamb_2362
Alternate gene names: NA
Gene position: 2607747-2609582 (Clockwise)
Preceding gene: 115352411
Following gene: 115352414
Centisome position: 73.32
GC content: 68.14
Gene sequence:
>1836_bases ATGCCCGCCTTGATCGAAGACTACGCCCTCGTCGGCGACGGACACACCGCCGCGCTGATTTCGAAAGAAGGCTCCGTCGA CTGGCTGTGCTGGCCCCGCTTCGATTCGGGCGCCTGTTTCGCGGCGCTGGTCGGCACCCCCGAGCACGGCCGCTGGCTGC TCGCGCCGGCTGCCGACGCCGCGATCACGCACACGTCACGCCGCTACCGCGGCGACACGCTGATTCTCGAAACCGACTAC GAAAGCGCCGACGGCGCCGTCACCGTGATCGACTTCATGCCGCCCGGCAATGGCTGGTCGGAACTCGTGCGGATCGTCGT CGGCCGGCACGGCACGATGAAGATGCGCATGGAGCTGGTGTTGCGCTTCGACTACGGTTTCTCGATCCCGTGGGTCACGC AGCTGTCACGCGAGAACGGGGTGAAAGCAATCGCCGGACCCGATACGGTCGTGCTGCGCACGCCGGTCGAGCTCACCGGC AAGAACCTGCACACGCTCGCCGAATTCACGGTGAGCGCCGACGAGCGCATCCCGTTTTCGCTCGGCTACGCGGCGTCCCA CCTGCGGCTGCCGCCCGCGCGCGATCCGCTGTCGATGCTCGCGCGCACCGAGAACTACTGGCTTGAATGGTCGGGGCGCT GCCAGGTGCAGGGCCGCTACGCGGCCGCCGTGCGCCGCTCGCTGATCACGCTGAAGGCGCTCGCGTACGAGCCGACCGGC GGCATCGTCGCGGCGCCCACCACGTCGCTGCCCGAGAAGATCGGCGGCAACCGCAACTGGGACTATCGCTACTGCTGGCT GCGCGATGCGACGATCACGCTGCTCGCGCTGATGCGCGGCGGCTACTACGACGAGGCGCGCGCGTGGCGCACGTGGCTCG GCCGCGTGATGGCCGGCTCGCCCGAGCAGATCCAGATCATGTACGGGATCGCCGGCGAGCGCCGGCTGCCGGAAATGGAA CTCGACTGGCTGCCCGGCTACCAGGATTCGAAACCGGTGCGCGTCGGCAACGGCGCCGCCAACCAGCTGCAGCTCGACGT GTTCGGCGAGATCATGGCCGCGCTGCATCTCGCGCGCGTGGGCGGCCTGCAGGCCGACGACACGGTCTGGTCCGTGCAAT GCGCGCTGCTCGATCATCTCGAGAAGATCTGGCAGGAGCCGGATGAAGGCATCTGGGAAACGCGCGGCGGACGCCGTCAT TTCACGTTCTCGAAGGTGATGGCGTGGGTCGCGTTCGACCGCGCGATCAAGTCGGCGGAGATGTTCCGGCTGCCCGGCTC GCTCGACCGCTGGCGCGCGCTGCGCGACCGGATTCATGCTGATGTATGCGACAACGCGTGGCATGAAGGCAAGCAGTCGT TTGCACAAAGCTACGGCAGCGACGAGCTCGACGCGAGCGTGCTGCTGATGCCGCTGCTCGGCTTCTTGCCGCCGGAAGAC CCGCGCATCGTCGGCACGGTCGAGGCGATCGAGCGGGAATTGCTGCACGACGGGCTCGTGATGCGCTACCGCACGACCGA ATACGACGACGGCCTGCCGCCCGGCGAAGGCACGTTTCTCGCATGCAGCTTCTGGCTGGTCGACAATTACGCGCTGCTCG GCCGAATCGACGACGCGCACCGGCTGTTCAGCCGGCTGCTCGCGCTGTCCAACGACCTCGGGCTGCTTGCCGAGGAGTAC GACCCGGTCGAAGGGCGGCTCGTCGGCAATTTCCCGCAGGCGTTCTCGCACGTGGCGCTGGTGCATACCGCGATGAACCT CATGCACCACGAAGATGCAATGGCGCGCGCGGCGGGCCAGCCGGCCCCCGCCCCGGCCATGGCGACGGGGCGCTGA
Upstream 100 bases:
>100_bases TCCGCCGCCCGGCCGAGTATACGGGGCGCGACGCCGACACGTGAAGCCCGGGCGCCGCAGCCTGCATTGTGAACTCGAAT AACCCAAGGACCGCTTGCCC
Downstream 100 bases:
>100_bases CCGGCGGCGGCGCGGCTTCTTCAGAGATCGTCAATTCGCAAAAATTTGATGAAAAAACGGGGAAATGTTGCATTGCAACA TTGATCGTTGTCCGATATGA
Product: glycoside hydrolase 15-like protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Trehalose-Phosphatase; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Glucoamylase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose 6-Phosphatase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; HAD Family Hydrolase; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Protein; Trehalose-6-Phosphate Phophatase
Number of amino acids: Translated: 611; Mature: 610
Protein sequence:
>611_residues MPALIEDYALVGDGHTAALISKEGSVDWLCWPRFDSGACFAALVGTPEHGRWLLAPAADAAITHTSRRYRGDTLILETDY ESADGAVTVIDFMPPGNGWSELVRIVVGRHGTMKMRMELVLRFDYGFSIPWVTQLSRENGVKAIAGPDTVVLRTPVELTG KNLHTLAEFTVSADERIPFSLGYAASHLRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTG GIVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEME LDWLPGYQDSKPVRVGNGAANQLQLDVFGEIMAALHLARVGGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRH FTFSKVMAWVAFDRAIKSAEMFRLPGSLDRWRALRDRIHADVCDNAWHEGKQSFAQSYGSDELDASVLLMPLLGFLPPED PRIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDNYALLGRIDDAHRLFSRLLALSNDLGLLAEEY DPVEGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQPAPAPAMATGR
Sequences:
>Translated_611_residues MPALIEDYALVGDGHTAALISKEGSVDWLCWPRFDSGACFAALVGTPEHGRWLLAPAADAAITHTSRRYRGDTLILETDY ESADGAVTVIDFMPPGNGWSELVRIVVGRHGTMKMRMELVLRFDYGFSIPWVTQLSRENGVKAIAGPDTVVLRTPVELTG KNLHTLAEFTVSADERIPFSLGYAASHLRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTG GIVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEME LDWLPGYQDSKPVRVGNGAANQLQLDVFGEIMAALHLARVGGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRH FTFSKVMAWVAFDRAIKSAEMFRLPGSLDRWRALRDRIHADVCDNAWHEGKQSFAQSYGSDELDASVLLMPLLGFLPPED PRIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDNYALLGRIDDAHRLFSRLLALSNDLGLLAEEY DPVEGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQPAPAPAMATGR >Mature_610_residues PALIEDYALVGDGHTAALISKEGSVDWLCWPRFDSGACFAALVGTPEHGRWLLAPAADAAITHTSRRYRGDTLILETDYE SADGAVTVIDFMPPGNGWSELVRIVVGRHGTMKMRMELVLRFDYGFSIPWVTQLSRENGVKAIAGPDTVVLRTPVELTGK NLHTLAEFTVSADERIPFSLGYAASHLRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTGG IVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEMEL DWLPGYQDSKPVRVGNGAANQLQLDVFGEIMAALHLARVGGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRHF TFSKVMAWVAFDRAIKSAEMFRLPGSLDRWRALRDRIHADVCDNAWHEGKQSFAQSYGSDELDASVLLMPLLGFLPPEDP RIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDNYALLGRIDDAHRLFSRLLALSNDLGLLAEEYD PVEGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQPAPAPAMATGR
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68004; Mature: 67873
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALIEDYALVGDGHTAALISKEGSVDWLCWPRFDSGACFAALVGTPEHGRWLLAPAADA CCCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCH AITHTSRRYRGDTLILETDYESADGAVTVIDFMPPGNGWSELVRIVVGRHGTMKMRMELV HHHHCCHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE LRFDYGFSIPWVTQLSRENGVKAIAGPDTVVLRTPVELTGKNLHTLAEFTVSADERIPFS EEECCCCCCCHHHHHHHHCCCEEECCCCEEEEECCHHHCCCCHHHHHHEEECCCCCCCEE LGYAASHLRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTG ECCCHHHCCCCCCCCHHHHHHCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHEEECCCC GIVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGS CEEECCCCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC PEQIQIMYGIAGERRLPEMELDWLPGYQDSKPVRVGNGAANQLQLDVFGEIMAALHLARV CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHH GGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRHFTFSKVMAWVAFDRAIKSAE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH MFRLPGSLDRWRALRDRIHADVCDNAWHEGKQSFAQSYGSDELDASVLLMPLLGFLPPED HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC PRIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDNYALLGRIDDAH CEEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEEEHHCEEEEECCCHHH RLFSRLLALSNDLGLLAEEYDPVEGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQ HHHHHHHHHCCCCCCHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PAPAPAMATGR CCCCCCCCCCC >Mature Secondary Structure PALIEDYALVGDGHTAALISKEGSVDWLCWPRFDSGACFAALVGTPEHGRWLLAPAADA CCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCH AITHTSRRYRGDTLILETDYESADGAVTVIDFMPPGNGWSELVRIVVGRHGTMKMRMELV HHHHCCHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE LRFDYGFSIPWVTQLSRENGVKAIAGPDTVVLRTPVELTGKNLHTLAEFTVSADERIPFS EEECCCCCCCHHHHHHHHCCCEEECCCCEEEEECCHHHCCCCHHHHHHEEECCCCCCCEE LGYAASHLRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTG ECCCHHHCCCCCCCCHHHHHHCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHEEECCCC GIVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGS CEEECCCCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC PEQIQIMYGIAGERRLPEMELDWLPGYQDSKPVRVGNGAANQLQLDVFGEIMAALHLARV CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHH GGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRHFTFSKVMAWVAFDRAIKSAE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH MFRLPGSLDRWRALRDRIHADVCDNAWHEGKQSFAQSYGSDELDASVLLMPLLGFLPPED HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC PRIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDNYALLGRIDDAH CEEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEEEHHCEEEEECCCHHH RLFSRLLALSNDLGLLAEEYDPVEGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQ HHHHHHHHHCCCCCCHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PAPAPAMATGR CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA