| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352398
Identifier: 115352398
GI number: 115352398
Start: 2584252
End: 2585004
Strand: Direct
Name: 115352398
Synonym: Bamb_2347
Alternate gene names: NA
Gene position: 2584252-2585004 (Clockwise)
Preceding gene: 115352395
Following gene: 115352399
Centisome position: 72.66
GC content: 70.65
Gene sequence:
>753_bases ATGGCAGAACCCACCCTCGGCGTCGCCCTCATCGCCCTCAACGCGGCCGCGCGGCTCGCGCAGTGCCTCGACGCGCTGGC CTTCGCCGACGACGTCGTCGTGATCGACGGCGGCAGCACCGACGATACCGTCGCGATCGCTCGTGCACATGGCGCGCGCG TGATCGTCGAGCGCGACTGGCCGGGCTTCGGCCCGCAGAAGAACCGCGCGCTCGCCGCGCTCGACACCGACTGGATCCTG TCGCTCGACACCGACGAGGTGGTCAGCCCCGAACTTGCGCAGTCGATCCGTGCGGCCATCCGCGCGCCGGCCGCGCAAGT CTACGCGCTCGACCGGCTGTCGAGCTTCTGCGGCCAGTGGATCCGCCACAGCGGCTGGTATCCGGACTGGGTGCCGCGCC TGTTCCGGCGCGGCGCCGCACGCTTCTCCGACGACCTGGTGCACGAGCGGCTCGTGTTCGACACGCCCGCGCAGCGGCTG GCGGGCAAGCTGATGCACTATTCATACGAGGATTTCGAAACCGTCGTGCGTAAGCTCGATGCGTATTCGACGGCCGGCGC GCGCCAGCGCCGCGCGGCCGGCCAGCGCGGCGGCTTCGGCAAGGCGCTCGCGCGCGGCGCATGGGCGTTCGTGCGGACCT ACGTGCTGCGGCGCGGATTTCTCGACGGACGCGCGGGCTTCATGATCGCCGTGTTCAACGCGGAAACGGTGTACTACCGG TTCCTGAAGCTCGGCCACGAGCCGGCCCGCTGA
Upstream 100 bases:
>100_bases CTGTACCGCCCGCGCCGGCACGGCCGTTGCCGAAGCGGCCGCCGGCCGGTGCGCGGGTATACTGCCGCTCACCGTTTTCT CCGCCTTTTTCGACGATTTC
Downstream 100 bases:
>100_bases GCGCGGGCCGCCCCGCCCCACCCCGACGCCGCCGGCATGCGGCCGGCCCGGCGTTACAATGCCGGGCTGCCCGCATGCGA TGCGCGCCCCAAGCGCGGCG
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MAEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDWPGFGPQKNRALAALDTDWIL SLDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQWIRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRL AGKLMHYSYEDFETVVRKLDAYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYR FLKLGHEPAR
Sequences:
>Translated_250_residues MAEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDWPGFGPQKNRALAALDTDWIL SLDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQWIRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRL AGKLMHYSYEDFETVVRKLDAYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYR FLKLGHEPAR >Mature_249_residues AEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDWPGFGPQKNRALAALDTDWILS LDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQWIRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRLA GKLMHYSYEDFETVVRKLDAYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYRF LKLGHEPAR
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 27643; Mature: 27512
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDW CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCEEEEECCC PGFGPQKNRALAALDTDWILSLDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQW CCCCCCCCCEEEEECCCEEEECCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH IRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRLAGKLMHYSYEDFETVVRKLD HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH AYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYR HHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH FLKLGHEPAR HHHHCCCCCC >Mature Secondary Structure AEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDW CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCEEEEECCC PGFGPQKNRALAALDTDWILSLDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQW CCCCCCCCCEEEEECCCEEEECCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH IRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRLAGKLMHYSYEDFETVVRKLD HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH AYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYR HHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH FLKLGHEPAR HHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]