Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352398

Identifier: 115352398

GI number: 115352398

Start: 2584252

End: 2585004

Strand: Direct

Name: 115352398

Synonym: Bamb_2347

Alternate gene names: NA

Gene position: 2584252-2585004 (Clockwise)

Preceding gene: 115352395

Following gene: 115352399

Centisome position: 72.66

GC content: 70.65

Gene sequence:

>753_bases
ATGGCAGAACCCACCCTCGGCGTCGCCCTCATCGCCCTCAACGCGGCCGCGCGGCTCGCGCAGTGCCTCGACGCGCTGGC
CTTCGCCGACGACGTCGTCGTGATCGACGGCGGCAGCACCGACGATACCGTCGCGATCGCTCGTGCACATGGCGCGCGCG
TGATCGTCGAGCGCGACTGGCCGGGCTTCGGCCCGCAGAAGAACCGCGCGCTCGCCGCGCTCGACACCGACTGGATCCTG
TCGCTCGACACCGACGAGGTGGTCAGCCCCGAACTTGCGCAGTCGATCCGTGCGGCCATCCGCGCGCCGGCCGCGCAAGT
CTACGCGCTCGACCGGCTGTCGAGCTTCTGCGGCCAGTGGATCCGCCACAGCGGCTGGTATCCGGACTGGGTGCCGCGCC
TGTTCCGGCGCGGCGCCGCACGCTTCTCCGACGACCTGGTGCACGAGCGGCTCGTGTTCGACACGCCCGCGCAGCGGCTG
GCGGGCAAGCTGATGCACTATTCATACGAGGATTTCGAAACCGTCGTGCGTAAGCTCGATGCGTATTCGACGGCCGGCGC
GCGCCAGCGCCGCGCGGCCGGCCAGCGCGGCGGCTTCGGCAAGGCGCTCGCGCGCGGCGCATGGGCGTTCGTGCGGACCT
ACGTGCTGCGGCGCGGATTTCTCGACGGACGCGCGGGCTTCATGATCGCCGTGTTCAACGCGGAAACGGTGTACTACCGG
TTCCTGAAGCTCGGCCACGAGCCGGCCCGCTGA

Upstream 100 bases:

>100_bases
CTGTACCGCCCGCGCCGGCACGGCCGTTGCCGAAGCGGCCGCCGGCCGGTGCGCGGGTATACTGCCGCTCACCGTTTTCT
CCGCCTTTTTCGACGATTTC

Downstream 100 bases:

>100_bases
GCGCGGGCCGCCCCGCCCCACCCCGACGCCGCCGGCATGCGGCCGGCCCGGCGTTACAATGCCGGGCTGCCCGCATGCGA
TGCGCGCCCCAAGCGCGGCG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDWPGFGPQKNRALAALDTDWIL
SLDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQWIRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRL
AGKLMHYSYEDFETVVRKLDAYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYR
FLKLGHEPAR

Sequences:

>Translated_250_residues
MAEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDWPGFGPQKNRALAALDTDWIL
SLDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQWIRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRL
AGKLMHYSYEDFETVVRKLDAYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYR
FLKLGHEPAR
>Mature_249_residues
AEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDWPGFGPQKNRALAALDTDWILS
LDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQWIRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRLA
GKLMHYSYEDFETVVRKLDAYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYRF
LKLGHEPAR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 27643; Mature: 27512

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCEEEEECCC
PGFGPQKNRALAALDTDWILSLDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQW
CCCCCCCCCEEEEECCCEEEECCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
IRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRLAGKLMHYSYEDFETVVRKLD
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH
AYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYR
HHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
FLKLGHEPAR
HHHHCCCCCC
>Mature Secondary Structure 
AEPTLGVALIALNAAARLAQCLDALAFADDVVVIDGGSTDDTVAIARAHGARVIVERDW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCEEEEECCC
PGFGPQKNRALAALDTDWILSLDTDEVVSPELAQSIRAAIRAPAAQVYALDRLSSFCGQW
CCCCCCCCCEEEEECCCEEEECCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
IRHSGWYPDWVPRLFRRGAARFSDDLVHERLVFDTPAQRLAGKLMHYSYEDFETVVRKLD
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH
AYSTAGARQRRAAGQRGGFGKALARGAWAFVRTYVLRRGFLDGRAGFMIAVFNAETVYYR
HHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
FLKLGHEPAR
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]