Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352395

Identifier: 115352395

GI number: 115352395

Start: 2581180

End: 2581746

Strand: Direct

Name: 115352395

Synonym: Bamb_2344

Alternate gene names: NA

Gene position: 2581180-2581746 (Clockwise)

Preceding gene: 115352394

Following gene: 115352398

Centisome position: 72.58

GC content: 68.78

Gene sequence:

>567_bases
ATGGATACGATCAGGACACTCAACGAAGCCCGCCAGCAGATCCAGCAGTCGATCTTCGATCTGTTCAAGGGGTTGACCTT
CGGCGAACGGCTCACGCAGGGTGCGCTGATGGCGCTGCAGGCGGTGTGCGGCGCGTGCCTCGCGTACACGATCGGCCGCG
CGCTGCACACCGAACAGGCCGTGTGGGCGGCGGTCACCGCGATCGCCGTCACGCAGCACAACTACTCGGACACGATGTCG
CTGTCGCGCGACCAGTTCATCGGCGCGATGATCGGCGGCCTGCTCGGCTTCGCGGGCGCGGCGCTCGGCGGCGACCGCCT
CGTCGCCTATGCGCTCGCGGTCGCGCTCACGATCGTCAGCTGCTGGTGCCTGAACGTCGGCAGCGCGGCGCGGCTCGGCG
GCGTGACCGCGACGATCGTGCTGCTGTTTCCGGGCAACGGCCCGCTATGGGATATTCCGCTGATGCGACTCGGGGAAGTG
GCGCTCGGCACCGTGTGCGCGCTGGCCGTGTGCTGGGCGATGTCGCTGATCGAGCGACGCTGGTTCCGCCGGGCGGCGGC
AAAGTGA

Upstream 100 bases:

>100_bases
CCCGAAACGCGCGTCGACAACGGCGACGTGACCGCCGGCGAGCCGGCCGACGCGTCGCCCGAACAGGCGCACTGACGCCC
CCGCTTCCCGGCACGACACG

Downstream 100 bases:

>100_bases
CGCGGCGCCGGGCAACGCGCCCGGCAGCCGGATGAACCATCGGAAAGAAACGTTACGGACCGACCCGCAGCACGATGCCC
GAACCGATCTGCACGAGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDTIRTLNEARQQIQQSIFDLFKGLTFGERLTQGALMALQAVCGACLAYTIGRALHTEQAVWAAVTAIAVTQHNYSDTMS
LSRDQFIGAMIGGLLGFAGAALGGDRLVAYALAVALTIVSCWCLNVGSAARLGGVTATIVLLFPGNGPLWDIPLMRLGEV
ALGTVCALAVCWAMSLIERRWFRRAAAK

Sequences:

>Translated_188_residues
MDTIRTLNEARQQIQQSIFDLFKGLTFGERLTQGALMALQAVCGACLAYTIGRALHTEQAVWAAVTAIAVTQHNYSDTMS
LSRDQFIGAMIGGLLGFAGAALGGDRLVAYALAVALTIVSCWCLNVGSAARLGGVTATIVLLFPGNGPLWDIPLMRLGEV
ALGTVCALAVCWAMSLIERRWFRRAAAK
>Mature_188_residues
MDTIRTLNEARQQIQQSIFDLFKGLTFGERLTQGALMALQAVCGACLAYTIGRALHTEQAVWAAVTAIAVTQHNYSDTMS
LSRDQFIGAMIGGLLGFAGAALGGDRLVAYALAVALTIVSCWCLNVGSAARLGGVTATIVLLFPGNGPLWDIPLMRLGEV
ALGTVCALAVCWAMSLIERRWFRRAAAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20020; Mature: 20020

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS00457 NA_SOLUT_SYMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTIRTLNEARQQIQQSIFDLFKGLTFGERLTQGALMALQAVCGACLAYTIGRALHTEQA
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VWAAVTAIAVTQHNYSDTMSLSRDQFIGAMIGGLLGFAGAALGGDRLVAYALAVALTIVS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
CWCLNVGSAARLGGVTATIVLLFPGNGPLWDIPLMRLGEVALGTVCALAVCWAMSLIERR
HHHHCCCCHHHHCCCEEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFRRAAAK
HHHHHHCC
>Mature Secondary Structure
MDTIRTLNEARQQIQQSIFDLFKGLTFGERLTQGALMALQAVCGACLAYTIGRALHTEQA
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VWAAVTAIAVTQHNYSDTMSLSRDQFIGAMIGGLLGFAGAALGGDRLVAYALAVALTIVS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
CWCLNVGSAARLGGVTATIVLLFPGNGPLWDIPLMRLGEVALGTVCALAVCWAMSLIERR
HHHHCCCCHHHHCCCEEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFRRAAAK
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA