| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352393
Identifier: 115352393
GI number: 115352393
Start: 2578933
End: 2579898
Strand: Direct
Name: 115352393
Synonym: Bamb_2342
Alternate gene names: NA
Gene position: 2578933-2579898 (Clockwise)
Preceding gene: 115352392
Following gene: 115352394
Centisome position: 72.51
GC content: 72.36
Gene sequence:
>966_bases ATGAGCGGCGGACTCCCGTTTCCCGCATCCCGAATGTCGTTCCCGTCCTCGACGGTCTTCCTGGTGCTCGCCGCCGCGCT GCTGTCCGGCTGCAGCTTGCTGCCGACCCAGAATCCGCCCGCGCCGATCAGCGAGGCGCTCATCGAGCCCGTCCGGGAAA CCGCCGGCGAGCCGCTGACGATGCCGCCCGTGCCCGCGCCGACGCACCCGGAGGAACCGGAAGCGCCGAAAAAGCCGCAC CGCGAGGTGCCGCGGCCGAAGCCGGTGCAACGTGCCGAACCGCCGGCCCCGCCGCCTCCGCCGCCGCCCCCGCTCGTCGC GACCCGCCCGCTCGACCGCACCCAGATCCATGCGCTGCTCGACAGCGAAGTCGCGCGCCGCAACGGCAAGGTGATCGGCC GCGCGGTCGACATGGTGATCGACACGAGCGGCAAGCCGCGCGAGATGATCGTCAACCTGCAGGGTTTCATGGGCATCGGC GACCGCAAGGTCATCTTCCCGTGGAACGTGTTCCGCTTTACGCCGGGCGGCAAGCAGGAGCCGATCGTGCTCGACGTGCC GTCGGGCGACCTGCCGCCTGCCGCGAGGCCCAAGGCCGTGCCGCTGTCGGGTTCGGCCGCGGCGTCGCCCGCCACGCGGC TGCCGCTGCTCGACAGCGACGTCGAGCGCCCGAACGGCACGAAGATCGGCCGCGTCGTCGACGTGCTGATCGACCGCGCC GCGCAGCCGCAGGCCGTCGTGCTCGACCTCGGCGGCCTCGTCAATACCGACCGCCGTTCGATCGCCGCGAGCTGGGGCGC GCTGCGCTTCGTCACGCGTGACAAGGCGCTGCGCCCGCAGCTCGACCTCAACGACGCACAGATCAAGGCGGCGCCGCCCT ACGCGGCCGACAAGCCGATCGTCGCGGTCTACCCGCCCGTTGCCCCGGCACCGGCGCAGGCTTCCTCTGCGAGTGCGACC CGATGA
Upstream 100 bases:
>100_bases ACGTTAAACTCTCACCTCGCGAGGTGCGCCGCCCGCACCCGCCATCCATCGCCAGCCGCGCGCCTGCAGGCCCGGCCCCC GACCCATGGAGTGAGTGTCA
Downstream 100 bases:
>100_bases CGATCAAGCATTCCGTCACCGTACGTAGTCTGCGGTCCCTCGACTGGCTCAACTTTTTCGTTGCAAACGTTCAAACCGGG TTCGGTCCGTTCATCGCGTC
Product: PRC-barrel domain-containing protein
Products: NA
Alternate protein names: PRC-Barrel Domain-Containing Protein
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MSGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLTMPPVPAPTHPEEPEAPKKPH REVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALLDSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIG DRKVIFPWNVFRFTPGGKQEPIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRA AQPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPIVAVYPPVAPAPAQASSASAT R
Sequences:
>Translated_321_residues MSGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLTMPPVPAPTHPEEPEAPKKPH REVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALLDSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIG DRKVIFPWNVFRFTPGGKQEPIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRA AQPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPIVAVYPPVAPAPAQASSASAT R >Mature_320_residues SGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLTMPPVPAPTHPEEPEAPKKPHR EVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALLDSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIGD RKVIFPWNVFRFTPGGKQEPIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRAA QPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPIVAVYPPVAPAPAQASSASATR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33932; Mature: 33800
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLT CCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCC MPPVPAPTHPEEPEAPKKPHREVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALL CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHH DSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIGDRKVIFPWNVFRFTPGGKQE HHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEHHHCCCCCCEEEECCEEEEECCCCCCC PIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRA CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC AQPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPI CCCCEEEEECCCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCE VAVYPPVAPAPAQASSASATR EEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure SGGLPFPASRMSFPSSTVFLVLAAALLSGCSLLPTQNPPAPISEALIEPVRETAGEPLT CCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCC MPPVPAPTHPEEPEAPKKPHREVPRPKPVQRAEPPAPPPPPPPPLVATRPLDRTQIHALL CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHH DSEVARRNGKVIGRAVDMVIDTSGKPREMIVNLQGFMGIGDRKVIFPWNVFRFTPGGKQE HHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEHHHCCCCCCEEEECCEEEEECCCCCCC PIVLDVPSGDLPPAARPKAVPLSGSAAASPATRLPLLDSDVERPNGTKIGRVVDVLIDRA CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC AQPQAVVLDLGGLVNTDRRSIAASWGALRFVTRDKALRPQLDLNDAQIKAAPPYAADKPI CCCCEEEEECCCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCE VAVYPPVAPAPAQASSASATR EEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA