Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115352365

Identifier: 115352365

GI number: 115352365

Start: 2549149

End: 2551086

Strand: Direct

Name: 115352365

Synonym: Bamb_2314

Alternate gene names: NA

Gene position: 2549149-2551086 (Clockwise)

Preceding gene: 115352364

Following gene: 115352382

Centisome position: 71.67

GC content: 70.95

Gene sequence:

>1938_bases
ATGTCGCCGGACCGGCTTGACCCGACCGAGATCTTTTCCATGCCCGGAACCGCAGCACCCGGCCGGCGACGCACGTCCTC
CGTGCCCGCTTCGGCCACGCACGCCCGATCAGCCGCCGATCCCGCCCCCAACGCGACGCTCAATGCCGCCGGCACGCCCG
CCGTGGCAGGCGCCACCGCGACGAAGGGCCCCGGCGATCGCGTGCTGCGGCTCGGCTGGCGCGTCTGGCTGCTGGTCGCC
GCGCTGGTCTGCGCGTATACGCTGCCGGGCGTGCTCGGCCACGATCCGTGGAAGCAGGACGAAACCTATACGTTCGGCAT
CATCCAGCACATGCTCGAGACGGGCGACTTCGTCGTGCCCACCAACGCCGGCCTGCCCTTCATGGAAAAGCCGCCGCTCT
ACGCGTGGGTCGCGACGAGCCTCGCGTGGCTGCTGCAGCGCGTGATGCCGCTGCACGACGCGGCACGGCTCGCGAGCGCG
CTGTTCGCCGCGCTTGCGTTCGGCTTCATCGCACGCGCGGCACGCAGTGCCAGCCGCGCCCACGGCTGGCTCGACCTGCG
CGTGATCGGCCCCGTCGTGCTGAGCGCGGGCACGCTCGTCGTCATCAAGCACGTTCACGACATGATGACGGACGTCGCGC
TGTTCGCCGGCACCGCGATGGCCTTCTGCGGCCTGCTCGAGCTCGTGATGCAGCACGTCGCGCGTGCGCAGCAGATGCGG
CATGCGCTGCCGATGCAGCCGTCGGGCCGCTGGGCCGCGCCGATGTTCGGCGCGGGCGTCGGCATCGCGCTGATGGCGAA
GGGGCTGTTCGTGCCGCTCGTGTTCGCCGCCACGCTCATGGGCGCGCTGGTGCTCTACCCGGCCTGCCGCACGCGCGCGT
TCGCGCGCTCGCTCGCGGTCGCCGCGCTCGTGTTCGCACCGTTCGCGCTGATCTGGCCGATCGCGCTGTTCCTGCGCTCC
GAGACGCTGTTCATGACCTGGTTCTGGGACAACAACGTCGGCCGCTTCTTCGGCTTCTCCGTGCCGGAGCTCGGCGCGGA
AAACGACAAGCCGTTCTTCATCCTGCGTGCGTTCCTGCTCGTCGGCTTCCCGGTCGCACCGCTCGCGATCGTCGCGCTGG
CGCGCGGCGCATGGCGTGACTGGCACGCGCCGCGCGTCGCGCTGCCCGTGCTGTTCGCCGGCATCGGCCTCGCGGTGCTG
CAAGTGTCCGCGACCTCGCGTCAGCTCTACATCCTGCCGTTCTTCGCGCCGCTCGCGCTGATCGCCGCGCAGGCGATCGA
ACGCCTGCCGCGCGGGCTGCATCTCGCGTGGGATTATCTGAGCCGCCTGCTGTTCGGTAGCGCCGTCGCGCTCGCATGGG
TGATCTGGGCGGTGATGGCCGATCCGCGCGCATCGCGGGCGAGCCTCGCCCCGCTCGGCCGCTGGCTGCCGCTCGACTGG
ACGATGCCGATCGTGCCCGGGTTCGTGATCGGCGCGCTGGTGCTGACCGTCGGCTGGCTGTCGCTGCTGCCGAAGCTGCG
CACGACCGGCCCGTGGCGCGGCGCGCTGTCGTGGGGCGCGGGCGCGCTGGTGGCGTGGGGCCTCGTGTATACGCTGCTGC
TGCCGTGGCTCGACGTCGCGAAGAGCTACCGGTCGGTATTCGACGACCTGGACGCGCATCTCGCGCTCGAATGGCGCGAC
GACGACTGCATGGCAAGCCTGCACGGGCTCGGCGAGTCGGAAGCGCCGATGCTGTACTACTTCTCCGGGATCCAGCACAC
GCCGATCGACGACGCGAAGACGACGCGCTGCACGTGGATGATCGTCCAGGGCGTGCGGGCCGTCGATCCGGCGCCGGGCA
GCGAATGGAAACTGTTCTGGAGCGGCGCGCGCCCGGGCGACAACGCGGAACTGCTGCGCGTCTACGTGCGCACGCCTGAA
GCACACGACGCGCCGTGA

Upstream 100 bases:

>100_bases
CATTCGTAACACTTCCATGCTCTACTAGCGCCAAGCCTGAAAACGGTCGGTCATCCGGCTGTCTTTCTCGCATTGATGCG
CCCCTTATTGGTTCCGGCCC

Downstream 100 bases:

>100_bases
TGCAAGGCGGCGCCGCGCAACGGCGCCGTCGTAGTGATCCCCGGCCCGGCGTCACGCCCCGCGCGCCACCGCTGCGCACG
TCAAAACGACGAACCGGGCT

Product: glycosyltransferase

Products: NA

Alternate protein names: Glycosyl Transferase Family Protein; Glycosyltransferase; 4-Amino-4-Deoxy-L-Arabinose Transferase; Inner Membrane Protein

Number of amino acids: Translated: 645; Mature: 644

Protein sequence:

>645_residues
MSPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATATKGPGDRVLRLGWRVWLLVA
ALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASA
LFAALAFGFIARAARSASRAHGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMR
HALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAVAALVFAPFALIWPIALFLRS
ETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLLVGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVL
QVSATSRQLYILPFFAPLALIAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDW
TMPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVAKSYRSVFDDLDAHLALEWRD
DDCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPE
AHDAP

Sequences:

>Translated_645_residues
MSPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATATKGPGDRVLRLGWRVWLLVA
ALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASA
LFAALAFGFIARAARSASRAHGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMR
HALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAVAALVFAPFALIWPIALFLRS
ETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLLVGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVL
QVSATSRQLYILPFFAPLALIAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDW
TMPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVAKSYRSVFDDLDAHLALEWRD
DDCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPE
AHDAP
>Mature_644_residues
SPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATATKGPGDRVLRLGWRVWLLVAA
LVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASAL
FAALAFGFIARAARSASRAHGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMRH
ALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAVAALVFAPFALIWPIALFLRSE
TLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLLVGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVLQ
VSATSRQLYILPFFAPLALIAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDWT
MPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVAKSYRSVFDDLDAHLALEWRDD
DCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPEA
HDAP

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69993; Mature: 69861

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATA
CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCC
TKGPGDRVLRLGWRVWLLVAALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEE
TNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAARSASRA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMR
CCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAV
HHCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALVFAPFALIWPIALFLRSETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLL
HHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHH
VGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVLQVSATSRQLYILPFFAPLAL
HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEEHHHHHHH
IAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDW
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
TMPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
KSYRSVFDDLDAHLALEWRDDDCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWM
HHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHH
IVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPEAHDAP
HHHCHHHCCCCCCCCEEEEECCCCCCCCHHEEEEEEECCCCCCCC
>Mature Secondary Structure 
SPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATA
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCC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HHHCHHHCCCCCCCCEEEEECCCCCCCCHHEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA