| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is ygfF [H]
Identifier: 115352364
GI number: 115352364
Start: 2548198
End: 2548959
Strand: Direct
Name: ygfF [H]
Synonym: Bamb_2313
Alternate gene names: 115352364
Gene position: 2548198-2548959 (Clockwise)
Preceding gene: 115352363
Following gene: 115352365
Centisome position: 71.65
GC content: 72.97
Gene sequence:
>762_bases ATGCCCGCACTGTCCGATCGCAAGGCCGTCCTGATCACCGGCGCGAGCCGCGGCATCGGCCGCGCGACCGCCGTGCTCGC GGCCAAGCGCGGCTGGGACGTCGGCATCAACTACGCGCGCGACGCGGCCGCCGCCGAACTCACCGCGCGAGCCGTTCGCG ACGCCGGCGCACGCGCGTGCGTCGTCGCCGGCGACGTCGCGAACGAGGCGGACGTCGTCGCGATGTTCGACGCAGTCACG GCGGCGTTCGGCCGCCTCGACGCGCTCGTCAATAATGCGGGGATCGTCGCGCCGTCGATGCCGCTCGCCGACATGCCGGC CGACCGGCTGCGGCGGATGTTCGACACCAACGTGCTCGGCGCTTATCTATGCGCGCGCGAAGCCGCGCGCCGGCTGTCCA CCGACCGCGGCGGGCGCGGCGGCGCGATCGTCAACGTGTCGTCGATCGCGTCCCGGCTCGGTTCGCCGAACGAATACGTC GACTACGCGGGCTCGAAAGGCGCGGTCGATTCGCTGACGATCGGCCTGGCGAAGGAGCTCGGCCCGCACGGCGTGCGCGT CAACGCGGTGCGCCCGGGCCTGATCGAGACCGAAATTCATGCCAGCGGCGGCCAGCCGGGGCGCGCCGCGCGCCTCGGCG CGCAGACTCCGCTCGGCCGTGCGGGCGAAGCGCAGGAGATCGCCGAGGCGATCGTCTGGTTGCTTGGCGACGCGGCGTCA TACACGACGGGCGCGCTGCTCGACATCGGCGGCGGACGATAA
Upstream 100 bases:
>100_bases GTCGCGCTGATCGATCAGCTGCGCCGCTACCAGCCGCCCGTCCGCGACAAGTGGGCGTCCGACGACGCGGCCAAGTAACG CTTACGGAGAGCCACGCGCG
Downstream 100 bases:
>100_bases TCGCCCCGCAGGCGCCCCGACGCGCCGACTGAACATTCTTCTGGTCACGACACCACAAATCTCCACAATATCGTGACCAT TTCAGTAAACATTCGTAACA
Product: glucose-1-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MPALSDRKAVLITGASRGIGRATAVLAAKRGWDVGINYARDAAAAELTARAVRDAGARACVVAGDVANEADVVAMFDAVT AAFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYV DYAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAAS YTTGALLDIGGGR
Sequences:
>Translated_253_residues MPALSDRKAVLITGASRGIGRATAVLAAKRGWDVGINYARDAAAAELTARAVRDAGARACVVAGDVANEADVVAMFDAVT AAFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYV DYAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAAS YTTGALLDIGGGR >Mature_252_residues PALSDRKAVLITGASRGIGRATAVLAAKRGWDVGINYARDAAAAELTARAVRDAGARACVVAGDVANEADVVAMFDAVTA AFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVD YAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAASY TTGALLDIGGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=35.1020408163265, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=35.4838709677419, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=31.3253012048193, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI59889578, Length=208, Percent_Identity=34.1346153846154, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=30.2788844621514, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=28.735632183908, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=31.9066147859922, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI4758504, Length=240, Percent_Identity=29.5833333333333, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=30.4, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=31.1881188118812, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI209862901, Length=206, Percent_Identity=31.5533980582524, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI19923983, Length=206, Percent_Identity=31.5533980582524, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=29.5918367346939, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI40254986, Length=202, Percent_Identity=29.2079207920792, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI66933014, Length=175, Percent_Identity=34.2857142857143, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=53.0864197530864, Blast_Score=271, Evalue=2e-74, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=36.6935483870968, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1789378, Length=254, Percent_Identity=34.251968503937, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=35.3658536585366, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=31.7073170731707, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.7935222672065, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=34.8360655737705, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=30, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=32.319391634981, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.1124497991968, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=30.5882352941176, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789057, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787891, Length=249, Percent_Identity=29.718875502008, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=25, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=37.2, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=36.2204724409449, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI115534694, Length=255, Percent_Identity=34.9019607843137, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=33.7164750957854, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=34.251968503937, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562904, Length=248, Percent_Identity=31.4516129032258, Blast_Score=104, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17544670, Length=247, Percent_Identity=33.1983805668016, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI72000259, Length=241, Percent_Identity=33.195020746888, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=32.4626865671642, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=33.7448559670782, Blast_Score=97, Evalue=5e-21, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=32.9501915708812, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17563726, Length=239, Percent_Identity=35.1464435146443, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=30.9701492537313, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=33.0827067669173, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=31.3953488372093, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=32.3529411764706, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=31.5384615384615, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=31.0756972111554, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=30.6122448979592, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=31.8007662835249, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17538486, Length=272, Percent_Identity=30.8823529411765, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538182, Length=213, Percent_Identity=31.4553990610329, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=29.8039215686275, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562908, Length=205, Percent_Identity=34.6341463414634, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17561272, Length=246, Percent_Identity=30.0813008130081, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=29.5719844357977, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=27.3076923076923, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=31.2977099236641, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71982365, Length=197, Percent_Identity=29.4416243654822, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17564282, Length=254, Percent_Identity=30.7086614173228, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17558628, Length=196, Percent_Identity=31.6326530612245, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508895, Length=235, Percent_Identity=29.3617021276596, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=259, Percent_Identity=28.957528957529, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=234, Percent_Identity=32.4786324786325, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322226, Length=201, Percent_Identity=25.3731343283582, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357041, Length=261, Percent_Identity=39.0804597701149, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=37.3015873015873, Blast_Score=134, Evalue=8e-32, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=37.2093023255814, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=35.8565737051793, Blast_Score=128, Evalue=4e-30, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=32.3886639676113, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24644337, Length=198, Percent_Identity=35.8585858585859, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=32.8063241106719, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=31.640625, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI17737361, Length=230, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI116007236, Length=238, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640492, Length=208, Percent_Identity=29.8076923076923, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24641232, Length=206, Percent_Identity=31.0679611650485, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24584752, Length=196, Percent_Identity=30.6122448979592, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641388, Length=199, Percent_Identity=34.1708542713568, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=30.3482587064677, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648693, Length=249, Percent_Identity=28.5140562248996, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355889, Length=249, Percent_Identity=28.5140562248996, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357673, Length=205, Percent_Identity=29.7560975609756, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24648944, Length=207, Percent_Identity=28.0193236714976, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24663911, Length=238, Percent_Identity=28.1512605042017, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI28571387, Length=207, Percent_Identity=30.9178743961353, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25816; Mature: 25684
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALSDRKAVLITGASRGIGRATAVLAAKRGWDVGINYARDAAAAELTARAVRDAGARAC CCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VVAGDVANEADVVAMFDAVTAAFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLG EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDSLTIGLAKEL HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHC GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAAS CCCCEEEEEECCCEEEEEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCC YTTGALLDIGGGR CCCCEEEECCCCC >Mature Secondary Structure PALSDRKAVLITGASRGIGRATAVLAAKRGWDVGINYARDAAAAELTARAVRDAGARAC CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VVAGDVANEADVVAMFDAVTAAFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLG EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDSLTIGLAKEL HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHC GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAAS CCCCEEEEEECCCEEEEEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCC YTTGALLDIGGGR CCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]