| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352365
Identifier: 115352365
GI number: 115352365
Start: 2549149
End: 2551086
Strand: Direct
Name: 115352365
Synonym: Bamb_2314
Alternate gene names: NA
Gene position: 2549149-2551086 (Clockwise)
Preceding gene: 115352364
Following gene: 115352382
Centisome position: 71.67
GC content: 70.95
Gene sequence:
>1938_bases ATGTCGCCGGACCGGCTTGACCCGACCGAGATCTTTTCCATGCCCGGAACCGCAGCACCCGGCCGGCGACGCACGTCCTC CGTGCCCGCTTCGGCCACGCACGCCCGATCAGCCGCCGATCCCGCCCCCAACGCGACGCTCAATGCCGCCGGCACGCCCG CCGTGGCAGGCGCCACCGCGACGAAGGGCCCCGGCGATCGCGTGCTGCGGCTCGGCTGGCGCGTCTGGCTGCTGGTCGCC GCGCTGGTCTGCGCGTATACGCTGCCGGGCGTGCTCGGCCACGATCCGTGGAAGCAGGACGAAACCTATACGTTCGGCAT CATCCAGCACATGCTCGAGACGGGCGACTTCGTCGTGCCCACCAACGCCGGCCTGCCCTTCATGGAAAAGCCGCCGCTCT ACGCGTGGGTCGCGACGAGCCTCGCGTGGCTGCTGCAGCGCGTGATGCCGCTGCACGACGCGGCACGGCTCGCGAGCGCG CTGTTCGCCGCGCTTGCGTTCGGCTTCATCGCACGCGCGGCACGCAGTGCCAGCCGCGCCCACGGCTGGCTCGACCTGCG CGTGATCGGCCCCGTCGTGCTGAGCGCGGGCACGCTCGTCGTCATCAAGCACGTTCACGACATGATGACGGACGTCGCGC TGTTCGCCGGCACCGCGATGGCCTTCTGCGGCCTGCTCGAGCTCGTGATGCAGCACGTCGCGCGTGCGCAGCAGATGCGG CATGCGCTGCCGATGCAGCCGTCGGGCCGCTGGGCCGCGCCGATGTTCGGCGCGGGCGTCGGCATCGCGCTGATGGCGAA GGGGCTGTTCGTGCCGCTCGTGTTCGCCGCCACGCTCATGGGCGCGCTGGTGCTCTACCCGGCCTGCCGCACGCGCGCGT TCGCGCGCTCGCTCGCGGTCGCCGCGCTCGTGTTCGCACCGTTCGCGCTGATCTGGCCGATCGCGCTGTTCCTGCGCTCC GAGACGCTGTTCATGACCTGGTTCTGGGACAACAACGTCGGCCGCTTCTTCGGCTTCTCCGTGCCGGAGCTCGGCGCGGA AAACGACAAGCCGTTCTTCATCCTGCGTGCGTTCCTGCTCGTCGGCTTCCCGGTCGCACCGCTCGCGATCGTCGCGCTGG CGCGCGGCGCATGGCGTGACTGGCACGCGCCGCGCGTCGCGCTGCCCGTGCTGTTCGCCGGCATCGGCCTCGCGGTGCTG CAAGTGTCCGCGACCTCGCGTCAGCTCTACATCCTGCCGTTCTTCGCGCCGCTCGCGCTGATCGCCGCGCAGGCGATCGA ACGCCTGCCGCGCGGGCTGCATCTCGCGTGGGATTATCTGAGCCGCCTGCTGTTCGGTAGCGCCGTCGCGCTCGCATGGG TGATCTGGGCGGTGATGGCCGATCCGCGCGCATCGCGGGCGAGCCTCGCCCCGCTCGGCCGCTGGCTGCCGCTCGACTGG ACGATGCCGATCGTGCCCGGGTTCGTGATCGGCGCGCTGGTGCTGACCGTCGGCTGGCTGTCGCTGCTGCCGAAGCTGCG CACGACCGGCCCGTGGCGCGGCGCGCTGTCGTGGGGCGCGGGCGCGCTGGTGGCGTGGGGCCTCGTGTATACGCTGCTGC TGCCGTGGCTCGACGTCGCGAAGAGCTACCGGTCGGTATTCGACGACCTGGACGCGCATCTCGCGCTCGAATGGCGCGAC GACGACTGCATGGCAAGCCTGCACGGGCTCGGCGAGTCGGAAGCGCCGATGCTGTACTACTTCTCCGGGATCCAGCACAC GCCGATCGACGACGCGAAGACGACGCGCTGCACGTGGATGATCGTCCAGGGCGTGCGGGCCGTCGATCCGGCGCCGGGCA GCGAATGGAAACTGTTCTGGAGCGGCGCGCGCCCGGGCGACAACGCGGAACTGCTGCGCGTCTACGTGCGCACGCCTGAA GCACACGACGCGCCGTGA
Upstream 100 bases:
>100_bases CATTCGTAACACTTCCATGCTCTACTAGCGCCAAGCCTGAAAACGGTCGGTCATCCGGCTGTCTTTCTCGCATTGATGCG CCCCTTATTGGTTCCGGCCC
Downstream 100 bases:
>100_bases TGCAAGGCGGCGCCGCGCAACGGCGCCGTCGTAGTGATCCCCGGCCCGGCGTCACGCCCCGCGCGCCACCGCTGCGCACG TCAAAACGACGAACCGGGCT
Product: glycosyltransferase
Products: NA
Alternate protein names: Glycosyl Transferase Family Protein; Glycosyltransferase; 4-Amino-4-Deoxy-L-Arabinose Transferase; Inner Membrane Protein
Number of amino acids: Translated: 645; Mature: 644
Protein sequence:
>645_residues MSPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATATKGPGDRVLRLGWRVWLLVA ALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASA LFAALAFGFIARAARSASRAHGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMR HALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAVAALVFAPFALIWPIALFLRS ETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLLVGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVL QVSATSRQLYILPFFAPLALIAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDW TMPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVAKSYRSVFDDLDAHLALEWRD DDCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPE AHDAP
Sequences:
>Translated_645_residues MSPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATATKGPGDRVLRLGWRVWLLVA ALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASA LFAALAFGFIARAARSASRAHGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMR HALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAVAALVFAPFALIWPIALFLRS ETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLLVGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVL QVSATSRQLYILPFFAPLALIAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDW TMPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVAKSYRSVFDDLDAHLALEWRD DDCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPE AHDAP >Mature_644_residues SPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATATKGPGDRVLRLGWRVWLLVAA LVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASAL FAALAFGFIARAARSASRAHGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMRH ALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAVAALVFAPFALIWPIALFLRSE TLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLLVGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVLQ VSATSRQLYILPFFAPLALIAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDWT MPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVAKSYRSVFDDLDAHLALEWRDD DCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPEA HDAP
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69993; Mature: 69861
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATA CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCC TKGPGDRVLRLGWRVWLLVAALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVP CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEE TNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAARSASRA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMR CCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAV HHCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALVFAPFALIWPIALFLRSETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLL HHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHH VGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVLQVSATSRQLYILPFFAPLAL HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEEHHHHHHH IAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDW HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC TMPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH KSYRSVFDDLDAHLALEWRDDDCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWM HHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHH IVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPEAHDAP HHHCHHHCCCCCCCCEEEEECCCCCCCCHHEEEEEEECCCCCCCC >Mature Secondary Structure SPDRLDPTEIFSMPGTAAPGRRRTSSVPASATHARSAADPAPNATLNAAGTPAVAGATA CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCC TKGPGDRVLRLGWRVWLLVAALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVP CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEE TNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAARSASRA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HGWLDLRVIGPVVLSAGTLVVIKHVHDMMTDVALFAGTAMAFCGLLELVMQHVARAQQMR CCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HALPMQPSGRWAAPMFGAGVGIALMAKGLFVPLVFAATLMGALVLYPACRTRAFARSLAV HHCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALVFAPFALIWPIALFLRSETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLL HHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHH VGFPVAPLAIVALARGAWRDWHAPRVALPVLFAGIGLAVLQVSATSRQLYILPFFAPLAL HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEEHHHHHHH IAAQAIERLPRGLHLAWDYLSRLLFGSAVALAWVIWAVMADPRASRASLAPLGRWLPLDW HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC TMPIVPGFVIGALVLTVGWLSLLPKLRTTGPWRGALSWGAGALVAWGLVYTLLLPWLDVA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH KSYRSVFDDLDAHLALEWRDDDCMASLHGLGESEAPMLYYFSGIQHTPIDDAKTTRCTWM HHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHH IVQGVRAVDPAPGSEWKLFWSGARPGDNAELLRVYVRTPEAHDAP HHHCHHHCCCCCCCCEEEEECCCCCCCCHHEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA