Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352358

Identifier: 115352358

GI number: 115352358

Start: 2543358

End: 2543867

Strand: Direct

Name: 115352358

Synonym: Bamb_2307

Alternate gene names: NA

Gene position: 2543358-2543867 (Clockwise)

Preceding gene: 115352357

Following gene: 115352359

Centisome position: 71.51

GC content: 72.94

Gene sequence:

>510_bases
GTGGCGAACGCCTCCGCACCCCAGGCCCCGGCCGTTGCCGCGCCGTCCGTGCGGCGGCGCCTCGCGGCGATGCTGTACGA
AGCCGTGCTGCTGTTCGGCGTCGTGTTCTTCGCGGGCCTCGCGTTCAGTCTCGCGATGCAGCAGCGCAACGGGCTCGTCC
ATCACGACCTCCTCGCCGCGTGGATCGCGCTCGTCGTCGGCGCGTATTTCGTCTGGTTCTGGACCCACGGCGGCCAGACG
CTGCCAATGAAGACCTGGCGGCTGCGGCTCGAATCGTCGAGCGGCCGGCCGCTGAGCGCCGCGCATGCGCTCGTCCGCTA
TGCGCTCGGCTGGCTGTGGTTCCTGCCGCCGCTCGCGCTGCATCCGCTGCTCGACCTGTCGGTGCCCGTCACGCTCGCGC
TCGCCGCCGCATGGATCGTCGCGTGGGCCGGCGCCGCCCGCCTGCACGCCGATCGCCAGTTCCCGCACGACCGCCTCGCG
CGCACGCGCGTCGTCGCGATTCCGCGCTGA

Upstream 100 bases:

>100_bases
GTCCTCCACGTCCGGTACCGCGCCTGCCCCCGCACCGGCCGTCGTCACGCCGGTGTCGCCGGCCGACGCGCCGTCGATGT
TCAAGGGTTCCTGATCGGCC

Downstream 100 bases:

>100_bases
CGAGCTGACGCCCCGCGCGGTTCGTGCATCCGTCAGACGAAACCCGTCGAAACCGCCCGCAGCACCGCCCCGCGCGCCTT
TCCCGATAGCGACAGGCCCG

Product: RDD domain-containing protein

Products: NA

Alternate protein names: RDD Domain Containing Protein; RDD Family Protein; Transmembrane Protein; RDD Family; RDD Family Membrane Protein; RDD Domain Protein

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAAWIALVVGAYFVWFWTHGGQT
LPMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLALHPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLA
RTRVVAIPR

Sequences:

>Translated_169_residues
MANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAAWIALVVGAYFVWFWTHGGQT
LPMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLALHPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLA
RTRVVAIPR
>Mature_168_residues
ANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAAWIALVVGAYFVWFWTHGGQTL
PMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLALHPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLAR
TRVVAIPR

Specific function: Unknown

COG id: COG1714

COG function: function code S; Predicted membrane protein/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18573; Mature: 18442

Theoretical pI: Translated: 12.11; Mature: 12.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
WIALVVGAYFVWFWTHGGQTLPMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLAL
HHHHHHHHHHHHHHHCCCCCCCHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
HPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLARTRVVAIPR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCC
>Mature Secondary Structure 
ANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
WIALVVGAYFVWFWTHGGQTLPMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLAL
HHHHHHHHHHHHHHHCCCCCCCHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
HPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLARTRVVAIPR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA