| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352358
Identifier: 115352358
GI number: 115352358
Start: 2543358
End: 2543867
Strand: Direct
Name: 115352358
Synonym: Bamb_2307
Alternate gene names: NA
Gene position: 2543358-2543867 (Clockwise)
Preceding gene: 115352357
Following gene: 115352359
Centisome position: 71.51
GC content: 72.94
Gene sequence:
>510_bases GTGGCGAACGCCTCCGCACCCCAGGCCCCGGCCGTTGCCGCGCCGTCCGTGCGGCGGCGCCTCGCGGCGATGCTGTACGA AGCCGTGCTGCTGTTCGGCGTCGTGTTCTTCGCGGGCCTCGCGTTCAGTCTCGCGATGCAGCAGCGCAACGGGCTCGTCC ATCACGACCTCCTCGCCGCGTGGATCGCGCTCGTCGTCGGCGCGTATTTCGTCTGGTTCTGGACCCACGGCGGCCAGACG CTGCCAATGAAGACCTGGCGGCTGCGGCTCGAATCGTCGAGCGGCCGGCCGCTGAGCGCCGCGCATGCGCTCGTCCGCTA TGCGCTCGGCTGGCTGTGGTTCCTGCCGCCGCTCGCGCTGCATCCGCTGCTCGACCTGTCGGTGCCCGTCACGCTCGCGC TCGCCGCCGCATGGATCGTCGCGTGGGCCGGCGCCGCCCGCCTGCACGCCGATCGCCAGTTCCCGCACGACCGCCTCGCG CGCACGCGCGTCGTCGCGATTCCGCGCTGA
Upstream 100 bases:
>100_bases GTCCTCCACGTCCGGTACCGCGCCTGCCCCCGCACCGGCCGTCGTCACGCCGGTGTCGCCGGCCGACGCGCCGTCGATGT TCAAGGGTTCCTGATCGGCC
Downstream 100 bases:
>100_bases CGAGCTGACGCCCCGCGCGGTTCGTGCATCCGTCAGACGAAACCCGTCGAAACCGCCCGCAGCACCGCCCCGCGCGCCTT TCCCGATAGCGACAGGCCCG
Product: RDD domain-containing protein
Products: NA
Alternate protein names: RDD Domain Containing Protein; RDD Family Protein; Transmembrane Protein; RDD Family; RDD Family Membrane Protein; RDD Domain Protein
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAAWIALVVGAYFVWFWTHGGQT LPMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLALHPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLA RTRVVAIPR
Sequences:
>Translated_169_residues MANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAAWIALVVGAYFVWFWTHGGQT LPMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLALHPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLA RTRVVAIPR >Mature_168_residues ANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAAWIALVVGAYFVWFWTHGGQTL PMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLALHPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLAR TRVVAIPR
Specific function: Unknown
COG id: COG1714
COG function: function code S; Predicted membrane protein/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18573; Mature: 18442
Theoretical pI: Translated: 12.11; Mature: 12.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH WIALVVGAYFVWFWTHGGQTLPMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLAL HHHHHHHHHHHHHHHCCCCCCCHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH HPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLARTRVVAIPR HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCC >Mature Secondary Structure ANASAPQAPAVAAPSVRRRLAAMLYEAVLLFGVVFFAGLAFSLAMQQRNGLVHHDLLAA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH WIALVVGAYFVWFWTHGGQTLPMKTWRLRLESSSGRPLSAAHALVRYALGWLWFLPPLAL HHHHHHHHHHHHHHHCCCCCCCHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH HPLLDLSVPVTLALAAAWIVAWAGAARLHADRQFPHDRLARTRVVAIPR HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA