| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352357
Identifier: 115352357
GI number: 115352357
Start: 2542587
End: 2543351
Strand: Direct
Name: 115352357
Synonym: Bamb_2306
Alternate gene names: NA
Gene position: 2542587-2543351 (Clockwise)
Preceding gene: 115352356
Following gene: 115352358
Centisome position: 71.49
GC content: 70.98
Gene sequence:
>765_bases GTGAATCAGAAACGCGGCCTGGCCGTATTTTTCGGATGCGTGATCGCGATCGCCGTTTCCTACGTCGCCACCTACTCCCG ATTCAACCCGCCCCCCGCGACGGTCTCCGCCGCGGCCAGCAGCGCACCCGCGCCGACCTCGGCCGCCGCCGCGCTGTCCA CCGAACTCGCCCCGCTGCCCCTGCCGCTGCCGGCCGCCAACGGCCCGCTGTCGTGGGCGCGGCTGACGCCCGCACAACAT GCGGCGCTCGCGCCGTTCGCCGATCAGTGGGACGGCTTCAGCGATGCGCGCAAGCGGAAATGGCTGAAGATCGCATCGCG TTTCGCGAAATTGACGCCGGATGAGCAAAAACACCTGCAGGACCGAATGTCCGAATGGGCGCGGATGACGCCCGAGCAGC GGCGCGTCGCACGCGAGAATTACCAGAGCGCGAAGGAGCTGTCCGCGCAGGCGCGCGAGCGCGCGTGGAAGGCCTACCAG CAATTGCCTGAAGAACAGAAGCAACGGCTCGCGGCGACCGAGCGCCGCCGCCGGCCGAGCGTCGTCAGCGCGCCGCCGAC CGTCGCCGACCGCGATGTGCGCCGCCTCGTCAATTCGCACGACCATCCGGCGAGCAACGTCGCCGCCGTGCCGGTGCCCG CCTCGGCCAGTGCCGGCTTGCCGCCCGCGGCGTCCTCCACGTCCGGTACCGCGCCTGCCCCCGCACCGGCCGTCGTCACG CCGGTGTCGCCGGCCGACGCGCCGTCGATGTTCAAGGGTTCCTGA
Upstream 100 bases:
>100_bases TGCTCAGTGACGACCTGCCGCTCAACGCGTATCTCGATCACGGGTTCAACGCGTATCTTTCGCACGCACGCTAACAGACA ATAACGAGGGGATCGCACGG
Downstream 100 bases:
>100_bases TCGGCCGTGGCGAACGCCTCCGCACCCCAGGCCCCGGCCGTTGCCGCGCCGTCCGTGCGGCGGCGCCTCGCGGCGATGCT GTACGAAGCCGTGCTGCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLPLPLPAANGPLSWARLTPAQH AALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQDRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQ QLPEEQKQRLAATERRRRPSVVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT PVSPADAPSMFKGS
Sequences:
>Translated_254_residues MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLPLPLPAANGPLSWARLTPAQH AALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQDRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQ QLPEEQKQRLAATERRRRPSVVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT PVSPADAPSMFKGS >Mature_254_residues MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLPLPLPAANGPLSWARLTPAQH AALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQDRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQ QLPEEQKQRLAATERRRRPSVVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT PVSPADAPSMFKGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27099; Mature: 27099
Theoretical pI: Translated: 10.96; Mature: 10.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLP CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCC LPLPAANGPLSWARLTPAQHAALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQ CCCCCCCCCCCHHHCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH DRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQQLPEEQKQRLAATERRRRPS HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC VVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT CCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC PVSPADAPSMFKGS CCCCCCCCCCCCCC >Mature Secondary Structure MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLP CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCC LPLPAANGPLSWARLTPAQHAALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQ CCCCCCCCCCCHHHCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH DRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQQLPEEQKQRLAATERRRRPS HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC VVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT CCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC PVSPADAPSMFKGS CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA