Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352357

Identifier: 115352357

GI number: 115352357

Start: 2542587

End: 2543351

Strand: Direct

Name: 115352357

Synonym: Bamb_2306

Alternate gene names: NA

Gene position: 2542587-2543351 (Clockwise)

Preceding gene: 115352356

Following gene: 115352358

Centisome position: 71.49

GC content: 70.98

Gene sequence:

>765_bases
GTGAATCAGAAACGCGGCCTGGCCGTATTTTTCGGATGCGTGATCGCGATCGCCGTTTCCTACGTCGCCACCTACTCCCG
ATTCAACCCGCCCCCCGCGACGGTCTCCGCCGCGGCCAGCAGCGCACCCGCGCCGACCTCGGCCGCCGCCGCGCTGTCCA
CCGAACTCGCCCCGCTGCCCCTGCCGCTGCCGGCCGCCAACGGCCCGCTGTCGTGGGCGCGGCTGACGCCCGCACAACAT
GCGGCGCTCGCGCCGTTCGCCGATCAGTGGGACGGCTTCAGCGATGCGCGCAAGCGGAAATGGCTGAAGATCGCATCGCG
TTTCGCGAAATTGACGCCGGATGAGCAAAAACACCTGCAGGACCGAATGTCCGAATGGGCGCGGATGACGCCCGAGCAGC
GGCGCGTCGCACGCGAGAATTACCAGAGCGCGAAGGAGCTGTCCGCGCAGGCGCGCGAGCGCGCGTGGAAGGCCTACCAG
CAATTGCCTGAAGAACAGAAGCAACGGCTCGCGGCGACCGAGCGCCGCCGCCGGCCGAGCGTCGTCAGCGCGCCGCCGAC
CGTCGCCGACCGCGATGTGCGCCGCCTCGTCAATTCGCACGACCATCCGGCGAGCAACGTCGCCGCCGTGCCGGTGCCCG
CCTCGGCCAGTGCCGGCTTGCCGCCCGCGGCGTCCTCCACGTCCGGTACCGCGCCTGCCCCCGCACCGGCCGTCGTCACG
CCGGTGTCGCCGGCCGACGCGCCGTCGATGTTCAAGGGTTCCTGA

Upstream 100 bases:

>100_bases
TGCTCAGTGACGACCTGCCGCTCAACGCGTATCTCGATCACGGGTTCAACGCGTATCTTTCGCACGCACGCTAACAGACA
ATAACGAGGGGATCGCACGG

Downstream 100 bases:

>100_bases
TCGGCCGTGGCGAACGCCTCCGCACCCCAGGCCCCGGCCGTTGCCGCGCCGTCCGTGCGGCGGCGCCTCGCGGCGATGCT
GTACGAAGCCGTGCTGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: Lipoprotein

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLPLPLPAANGPLSWARLTPAQH
AALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQDRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQ
QLPEEQKQRLAATERRRRPSVVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT
PVSPADAPSMFKGS

Sequences:

>Translated_254_residues
MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLPLPLPAANGPLSWARLTPAQH
AALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQDRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQ
QLPEEQKQRLAATERRRRPSVVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT
PVSPADAPSMFKGS
>Mature_254_residues
MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLPLPLPAANGPLSWARLTPAQH
AALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQDRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQ
QLPEEQKQRLAATERRRRPSVVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT
PVSPADAPSMFKGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27099; Mature: 27099

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCC
LPLPAANGPLSWARLTPAQHAALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQ
CCCCCCCCCCCHHHCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQQLPEEQKQRLAATERRRRPS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
VVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT
CCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
PVSPADAPSMFKGS
CCCCCCCCCCCCCC
>Mature Secondary Structure
MNQKRGLAVFFGCVIAIAVSYVATYSRFNPPPATVSAAASSAPAPTSAAAALSTELAPLP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCC
LPLPAANGPLSWARLTPAQHAALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQ
CCCCCCCCCCCHHHCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DRMSEWARMTPEQRRVARENYQSAKELSAQARERAWKAYQQLPEEQKQRLAATERRRRPS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
VVSAPPTVADRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPAPAVVT
CCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
PVSPADAPSMFKGS
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA