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The map label for this gene is 115352355

Identifier: 115352355

GI number: 115352355

Start: 2541560

End: 2542123

Strand: Direct

Name: 115352355

Synonym: Bamb_2304

Alternate gene names: NA

Gene position: 2541560-2542123 (Clockwise)

Preceding gene: 115352348

Following gene: 115352356

Centisome position: 71.46

GC content: 61.7

Gene sequence:

>564_bases
ATGGCATCAGACAAGGAACTCGCCGACTTTCTGGCGGGCGTCGAAAGGCGCGCGTTCAAGCAGGCTGCCTACGCCGTGCG
CGACGACGATGCGTCGCTCGACATCGTGCAGGACGCGATGATCAAGCTGGCGGAGAAATACGGCGACCGGCCGGCGGCCG
AGCTGCCGCTGCTGTTCCAGCGGATCCTGCAGAACGCCATCCACGACTGGTTCCGCCGGCAGAAGGTCCGCAATACGTGG
GTCACGCTCTTCTCGTCGCTCAACAATACGGACGACGACGACTTCGATCCGCTGGAAACACTCGAATCGGCGGACGACAA
TGCGGGAGTCGAGAGCACGGAGCACCGCCTCGAGCGGGAACAGGTTCTGGCCCTGATCGACGAAGAAATCCAGAAACTTC
CGGCGCGTCAACGGGAAGCGTTCCTGATGCGTTATTGGGAAGATATGGATGTCGCCGAGACTGCCGCCGCAATGGGGTGC
TCCGAAGGCAGCGTCAAGACGCACTGCTCGCGAGCCACTCATACCCTGGCACACGCGCTCAAGGCCAAAGGAATCACGCT
ATGA

Upstream 100 bases:

>100_bases
CCGGTGCCAAGTCGCGCGAAAATTTGTTAGCATCCGCGGGTTTTACGAAATTTTTCGACCCTTTTCACACGCCGCAGTCC
GCAGCGCATACCTTTACGGA

Downstream 100 bases:

>100_bases
GCTCCGCTCCCGTAAATCGAGAATACGAATTCGCGCTGAAGGTCCGCCGCGCGCTGGACGAACGTGCCGCGGCGCTGCCT
GCCGCGACCACCGACCGTCT

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQRILQNAIHDWFRRQKVRNTW
VTLFSSLNNTDDDDFDPLETLESADDNAGVESTEHRLEREQVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGC
SEGSVKTHCSRATHTLAHALKAKGITL

Sequences:

>Translated_187_residues
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQRILQNAIHDWFRRQKVRNTW
VTLFSSLNNTDDDDFDPLETLESADDNAGVESTEHRLEREQVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGC
SEGSVKTHCSRATHTLAHALKAKGITL
>Mature_186_residues
ASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQRILQNAIHDWFRRQKVRNTWV
TLFSSLNNTDDDDFDPLETLESADDNAGVESTEHRLEREQVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGCS
EGSVKTHCSRATHTLAHALKAKGITL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21154; Mature: 21023

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RILQNAIHDWFRRQKVRNTWVTLFSSLNNTDDDDFDPLETLESADDNAGVESTEHRLERE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH
QVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAHAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KAKGITL
HHCCCCC
>Mature Secondary Structure 
ASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RILQNAIHDWFRRQKVRNTWVTLFSSLNNTDDDDFDPLETLESADDNAGVESTEHRLERE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH
QVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAHAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KAKGITL
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA