| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352307
Identifier: 115352307
GI number: 115352307
Start: 2493561
End: 2494859
Strand: Direct
Name: 115352307
Synonym: Bamb_2256
Alternate gene names: NA
Gene position: 2493561-2494859 (Clockwise)
Preceding gene: 115352303
Following gene: 115352308
Centisome position: 70.11
GC content: 65.51
Gene sequence:
>1299_bases ATGCCGAAGCACAAGGCCGCTTATGGTGCAAAGAACGGACTAGAATGTGAGGCTCTTCGCCCCTTTCTATACGTATTTAA TATGCGCCAGCGAATCGCCAAACGCCTCCCCCCCGACGCCGACAAACTGGTCGGCCTGTCGCTTGCGCTCTTCGCCTCGG GCAGCCGCATCGAGGATCGCTTCTGGGAAGCGAAGCTCGACGCACTGCTCGCCAAGATCGTTCGCAATGGCAACCAGACC ACGCTCGACGCGGCACTCGACCATCTGCAGCAGAACCACCCCGATGCCTATGGCGCGCTCGCCGACATGGCCGAGACGCA CAGTGAATCGATGGTGATCGAGCACGACGGCCAGCCGTACGATGCACTGCTGGTTGCCGTCCCCGTTCTTGCGTGGACGC GCTACATGATTCCGTCAGGCTCGCTGAAAGGCGATGTCGCCGACGCACTGCGCACGCAACTGCAGGCGCACGTGCTCGCG AGCGGCACGCTCGTCGGACTGGCCCCGTTCCTGTACAGCATCGACCAGCTGCCGCGCCACCACGTCGAGACCTACCGGCT CGTCCAGCAACTCGCGCATGCAGCAATCGGCCAGCACGCCGCCAAGCTGAGCTTCGGCGACCTGCCCGAAACTTCGCCGA TCCTCGCCGACCCGCGCTTCCTGCTCGCCGTGGTGGCCGCGCCGGCCGGTGCACCGCTGTTCCGCTGGCAGGAAGAAGAG CACGGCAACCGGATCGAACGCGGCCAGTGTCTCGAGCAGTGGACCGCCCAGGGCGGCCCGAGCCTGTCGGTCGCCCTCCC CGGCTGCGAGTTCGAATGCCTGCTTCCGGACGCGTACTACTCGGCCTGCCGCGATGCGGACGAGAGGATCCGTCCGCACA CGGTCCGAACGGCCATCCGTTATCTTTTCGACACACTTGGTGCGGCACCGCAAGAACTTCGCGCCGTGGTCGCGGGCTTC GGCGAGCGCCGGATCGACGAGTATCGCGTCGGCTTCACGCGACGTGCCAGCAACGACGTGATCTATGGCGTCGTGTGGCC TCTGTACGGCCGCGAGAACGGCGACGTGTCGACCGACAACGCGACGCTCGAAGGCGAAGCGCCGATGGAAGGGCCGATGG AGGAAATCGTGAGTCTGCTGAAGGAATGCGGCGTAACCGACGTCCGGCGGCACGCAGGCCGCTTCGAGCCCGAGTACTGC GACGACTGCGGCGTGCCGCTCTATGCGGACCCCCTCGGCGAGATCGTCCACGCCGAAATGCCGGAAGACGCATCGCCGGC CCAGCCGCACTTTCACTGA
Upstream 100 bases:
>100_bases TCCGTTAGCGCGAAAGAGGCGTGATTCTAAGCACCCGCCTCGAACTGCGCAAGGGGTTTGATGGATTTTTCTTCACCCCC GTCGAGACGGCCTTCCGGCC
Downstream 100 bases:
>100_bases TCCGCGCACCGCAGGCTCGTCGAGCCTGCCCGACCAAGCCGCTCCCGGTTCCTGCCGGAGCGGCTTTTTTTCGCCCGCAT TTTCCCTCCGCTCAAAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MPKHKAAYGAKNGLECEALRPFLYVFNMRQRIAKRLPPDADKLVGLSLALFASGSRIEDRFWEAKLDALLAKIVRNGNQT TLDAALDHLQQNHPDAYGALADMAETHSESMVIEHDGQPYDALLVAVPVLAWTRYMIPSGSLKGDVADALRTQLQAHVLA SGTLVGLAPFLYSIDQLPRHHVETYRLVQQLAHAAIGQHAAKLSFGDLPETSPILADPRFLLAVVAAPAGAPLFRWQEEE HGNRIERGQCLEQWTAQGGPSLSVALPGCEFECLLPDAYYSACRDADERIRPHTVRTAIRYLFDTLGAAPQELRAVVAGF GERRIDEYRVGFTRRASNDVIYGVVWPLYGRENGDVSTDNATLEGEAPMEGPMEEIVSLLKECGVTDVRRHAGRFEPEYC DDCGVPLYADPLGEIVHAEMPEDASPAQPHFH
Sequences:
>Translated_432_residues MPKHKAAYGAKNGLECEALRPFLYVFNMRQRIAKRLPPDADKLVGLSLALFASGSRIEDRFWEAKLDALLAKIVRNGNQT TLDAALDHLQQNHPDAYGALADMAETHSESMVIEHDGQPYDALLVAVPVLAWTRYMIPSGSLKGDVADALRTQLQAHVLA SGTLVGLAPFLYSIDQLPRHHVETYRLVQQLAHAAIGQHAAKLSFGDLPETSPILADPRFLLAVVAAPAGAPLFRWQEEE HGNRIERGQCLEQWTAQGGPSLSVALPGCEFECLLPDAYYSACRDADERIRPHTVRTAIRYLFDTLGAAPQELRAVVAGF GERRIDEYRVGFTRRASNDVIYGVVWPLYGRENGDVSTDNATLEGEAPMEGPMEEIVSLLKECGVTDVRRHAGRFEPEYC DDCGVPLYADPLGEIVHAEMPEDASPAQPHFH >Mature_431_residues PKHKAAYGAKNGLECEALRPFLYVFNMRQRIAKRLPPDADKLVGLSLALFASGSRIEDRFWEAKLDALLAKIVRNGNQTT LDAALDHLQQNHPDAYGALADMAETHSESMVIEHDGQPYDALLVAVPVLAWTRYMIPSGSLKGDVADALRTQLQAHVLAS GTLVGLAPFLYSIDQLPRHHVETYRLVQQLAHAAIGQHAAKLSFGDLPETSPILADPRFLLAVVAAPAGAPLFRWQEEEH GNRIERGQCLEQWTAQGGPSLSVALPGCEFECLLPDAYYSACRDADERIRPHTVRTAIRYLFDTLGAAPQELRAVVAGFG ERRIDEYRVGFTRRASNDVIYGVVWPLYGRENGDVSTDNATLEGEAPMEGPMEEIVSLLKECGVTDVRRHAGRFEPEYCD DCGVPLYADPLGEIVHAEMPEDASPAQPHFH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47623; Mature: 47492
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKHKAAYGAKNGLECEALRPFLYVFNMRQRIAKRLPPDADKLVGLSLALFASGSRIEDR CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHH FWEAKLDALLAKIVRNGNQTTLDAALDHLQQNHPDAYGALADMAETHSESMVIEHDGQPY HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCH DALLVAVPVLAWTRYMIPSGSLKGDVADALRTQLQAHVLASGTLVGLAPFLYSIDQLPRH HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH HVETYRLVQQLAHAAIGQHAAKLSFGDLPETSPILADPRFLLAVVAAPAGAPLFRWQEEE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHH HGNRIERGQCLEQWTAQGGPSLSVALPGCEFECLLPDAYYSACRDADERIRPHTVRTAIR HCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHHHCCHHHHCCHHHHHHHHH YLFDTLGAAPQELRAVVAGFGERRIDEYRVGFTRRASNDVIYGVVWPLYGRENGDVSTDN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC ATLEGEAPMEGPMEEIVSLLKECGVTDVRRHAGRFEPEYCDDCGVPLYADPLGEIVHAEM CEECCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCCCHHHHHHHCCC PEDASPAQPHFH CCCCCCCCCCCC >Mature Secondary Structure PKHKAAYGAKNGLECEALRPFLYVFNMRQRIAKRLPPDADKLVGLSLALFASGSRIEDR CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHH FWEAKLDALLAKIVRNGNQTTLDAALDHLQQNHPDAYGALADMAETHSESMVIEHDGQPY HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCH DALLVAVPVLAWTRYMIPSGSLKGDVADALRTQLQAHVLASGTLVGLAPFLYSIDQLPRH HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH HVETYRLVQQLAHAAIGQHAAKLSFGDLPETSPILADPRFLLAVVAAPAGAPLFRWQEEE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHH HGNRIERGQCLEQWTAQGGPSLSVALPGCEFECLLPDAYYSACRDADERIRPHTVRTAIR HCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHHHCCHHHHCCHHHHHHHHH YLFDTLGAAPQELRAVVAGFGERRIDEYRVGFTRRASNDVIYGVVWPLYGRENGDVSTDN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC ATLEGEAPMEGPMEEIVSLLKECGVTDVRRHAGRFEPEYCDDCGVPLYADPLGEIVHAEM CEECCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCCCHHHHHHHCCC PEDASPAQPHFH CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA