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The map label for this gene is yhiR [H]

Identifier: 115352303

GI number: 115352303

Start: 2485545

End: 2486390

Strand: Direct

Name: yhiR [H]

Synonym: Bamb_2252

Alternate gene names: 115352303

Gene position: 2485545-2486390 (Clockwise)

Preceding gene: 115352302

Following gene: 115352307

Centisome position: 69.89

GC content: 61.7

Gene sequence:

>846_bases
ATGCTCAGTTATCGTCACGGTTTTCACGCAGGCAACCACGCGGACGTGCTCAAGCACGCCGTCGTCGTCCAACTGCTACG
CTACCTGAACAAGAAAGACAAGTCGTACTGGTACATCGACACGCACGCAGGCGCCGGCGTGTATTCGCTGCGCGAGGGTT
ATGCGGCCAAGACGGGGGAATTCGACACCGGCATCGGCCCGCTGTGGAACGACAAGAATCTGCCGGAGGCGCTCGGCGAT
TACATCGACGAGGTGCGCGCGCTGAACGATGACGGCGAGCTGCACTACTATCCGGGCTCGCCGTATCTTGCATGGCGCGC
GATGCGCGAGCAGGACCGGATGCGCCTGTTCGAGATGCATACGACGGAAATCGACGTGCTGCGTCACAACTTCCGCGATG
CCGGGCGACGCGCGATGATTTACGCCGGTGACGGCTTCGAAGGGATCAAGGCGCTGCTGCCGCCGCCGCCGCGACGCGCG
CTGGTGCTGATCGATCCGTCCTATGAGGACAAGAAAGATTACGCGCGCACGGTGACCTGCGTAACGGAATGCCTGAAGCG
TTTCGCCACCGGGTGTTACGCGATCTGGTATCCGCAGGTTGCGCGGGTGGAGTCGCAGCGTTTTCCTGAACAGCTCAAGC
GCCTGCAGCCGAACAACTGGCTGCACCTGACGTTGACGGTATCGAATCCGCCGGCAGATGGCCTAGGACTTTACGGCAGC
GGAATGTTCATCCTGAATCCGCCGTACACGCTCGCACAGAGCATGAACGAAGCGCTGCCCTATCTCGTCGAACGTCTGGG
ACAGGACAGCGGCGCCCGATGCGAGATCGAGCACCGCGGGAACTGA

Upstream 100 bases:

>100_bases
GTCCACTCGCGTACAATACGCGGCCGCAGTGGACGCGGCCCGACGGCCGCGCGCGATCGTCCGTTTTCATCGATTCATCC
TTCGTTTCAGGCAGCCAGCC

Downstream 100 bases:

>100_bases
GCGGGCGGCGGGCCGTTACGGTTGCAGTCTCGGGGCGGGCCTCGGCTGATTCGCACGCGACGCACCCCAGCCCGGCACAT
TGATATACGGCGCGACGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MLSYRHGFHAGNHADVLKHAVVVQLLRYLNKKDKSYWYIDTHAGAGVYSLREGYAAKTGEFDTGIGPLWNDKNLPEALGD
YIDEVRALNDDGELHYYPGSPYLAWRAMREQDRMRLFEMHTTEIDVLRHNFRDAGRRAMIYAGDGFEGIKALLPPPPRRA
LVLIDPSYEDKKDYARTVTCVTECLKRFATGCYAIWYPQVARVESQRFPEQLKRLQPNNWLHLTLTVSNPPADGLGLYGS
GMFILNPPYTLAQSMNEALPYLVERLGQDSGARCEIEHRGN

Sequences:

>Translated_281_residues
MLSYRHGFHAGNHADVLKHAVVVQLLRYLNKKDKSYWYIDTHAGAGVYSLREGYAAKTGEFDTGIGPLWNDKNLPEALGD
YIDEVRALNDDGELHYYPGSPYLAWRAMREQDRMRLFEMHTTEIDVLRHNFRDAGRRAMIYAGDGFEGIKALLPPPPRRA
LVLIDPSYEDKKDYARTVTCVTECLKRFATGCYAIWYPQVARVESQRFPEQLKRLQPNNWLHLTLTVSNPPADGLGLYGS
GMFILNPPYTLAQSMNEALPYLVERLGQDSGARCEIEHRGN
>Mature_281_residues
MLSYRHGFHAGNHADVLKHAVVVQLLRYLNKKDKSYWYIDTHAGAGVYSLREGYAAKTGEFDTGIGPLWNDKNLPEALGD
YIDEVRALNDDGELHYYPGSPYLAWRAMREQDRMRLFEMHTTEIDVLRHNFRDAGRRAMIYAGDGFEGIKALLPPPPRRA
LVLIDPSYEDKKDYARTVTCVTECLKRFATGCYAIWYPQVARVESQRFPEQLKRLQPNNWLHLTLTVSNPPADGLGLYGS
GMFILNPPYTLAQSMNEALPYLVERLGQDSGARCEIEHRGN

Specific function: Unknown

COG id: COG2961

COG function: function code R; Protein involved in catabolism of external DNA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0441 [H]

Homologues:

Organism=Escherichia coli, GI1789914, Length=266, Percent_Identity=46.9924812030075, Blast_Score=244, Evalue=4e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR007473 [H]

Pfam domain/function: PF04378 DUF519 [H]

EC number: NA

Molecular weight: Translated: 32054; Mature: 32054

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSYRHGFHAGNHADVLKHAVVVQLLRYLNKKDKSYWYIDTHAGAGVYSLREGYAAKTGE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCCC
FDTGIGPLWNDKNLPEALGDYIDEVRALNDDGELHYYPGSPYLAWRAMREQDRMRLFEMH
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
TTEIDVLRHNFRDAGRRAMIYAGDGFEGIKALLPPPPRRALVLIDPSYEDKKDYARTVTC
CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
VTECLKRFATGCYAIWYPQVARVESQRFPEQLKRLQPNNWLHLTLTVSNPPADGLGLYGS
HHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEC
GMFILNPPYTLAQSMNEALPYLVERLGQDSGARCEIEHRGN
CEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
>Mature Secondary Structure
MLSYRHGFHAGNHADVLKHAVVVQLLRYLNKKDKSYWYIDTHAGAGVYSLREGYAAKTGE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCCC
FDTGIGPLWNDKNLPEALGDYIDEVRALNDDGELHYYPGSPYLAWRAMREQDRMRLFEMH
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
TTEIDVLRHNFRDAGRRAMIYAGDGFEGIKALLPPPPRRALVLIDPSYEDKKDYARTVTC
CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
VTECLKRFATGCYAIWYPQVARVESQRFPEQLKRLQPNNWLHLTLTVSNPPADGLGLYGS
HHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEC
GMFILNPPYTLAQSMNEALPYLVERLGQDSGARCEIEHRGN
CEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]