| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is yetK [H]
Identifier: 115352282
GI number: 115352282
Start: 2465433
End: 2466341
Strand: Direct
Name: yetK [H]
Synonym: Bamb_2231
Alternate gene names: 115352282
Gene position: 2465433-2466341 (Clockwise)
Preceding gene: 115352278
Following gene: 115352283
Centisome position: 69.32
GC content: 68.21
Gene sequence:
>909_bases TTGAATCGCTACGCCCTCTTCCTCATTCTGTCGATGCTGTTCGTCGGCAGCAACGTCGGTATCGGTAAATCCATCGTCGT CTTCGTCCCGGTCGCCATCCTCGCCACGCTGCGCTTCGTGATCGCGATCGCCGTCCTGTGGCCGCTGTTCAGCCCGGTGA AGATGCGCGCGGTCCGGCGCGCGGAATGGCTGAACCTGTTCCTGCAGGCGTTCTTCGGCACCTTCATGTTCACGTTGCTG ATGCTCAACGGCGTGCAGCGCACGAGCGCGGTCGCGGCCGGCGTGATCACCAGCACGATCCCCGCCATCGTCGCGCTGTT CGCGTGGCTGATCCTGCGTGAAAAACCGAACGGCCGTGCGCTCGTGTCGATCGCGCTCGCGATCGCCGGCGTCGTGACGA TCAATCTCGCGAACGGCGGCGCGTCCGCGCACGACGCCGGCGCCGCCTCGTCCGGCTCGCTGACCGGCAACCTGCTGATC CTCGGCGCCGTCTGCTGCGAATCGATCTACGTGATCCTGTCGCGCCGGCTCACGCAGACGCTCGCGCCGATCGACATCTG CGCGTACACCCACCTGTTCGGCCTGTGCCTGATGCTGCCGCTCGGCGCGACGGCGCTGTGGCAGTTCGATTACGCGAGCG TGCCGGCCGGTACGTGGGCGCTCGTCGTCTGGTACGGGCTGTCGGCCAGCATCTTCTCGTTCTGGCTATGGATGAAGGGC ATCCGGCACGTGCCGGGCAGCCTCGCCGGCGTGTTCAGCGCGGTGCTGCCGGTCGCGGCCGCCGCATACGGCATCGCGTT CCTCGGCGAACGCCCGACGCCCGCGCACGGCATCGCGCTCGCGTGCGTCGTCACCGGCATCGTGCTCGCGAGCCTGCGCG TGAAACGCGCGCCGGCCGCGGCTGCCTGA
Upstream 100 bases:
>100_bases TCGCACGCCGCCGCGCCACGGTCGGCGCTTGGCCGTCGGCTTTACGCTGTTACAACTGCGACCCTACAATCGTAACTGAA CTCGCCCCCCGGACTCCAGC
Downstream 100 bases:
>100_bases TCCGTCCCCGGCTCTCCGGGCGCGTCGCTGCAGTCGCGCCGGCCGACGCGTTACAATAGCGCGCCTTTTCAAGATTACCC CCGATACCTGCGCACAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MNRYALFLILSMLFVGSNVGIGKSIVVFVPVAILATLRFVIAIAVLWPLFSPVKMRAVRRAEWLNLFLQAFFGTFMFTLL MLNGVQRTSAVAAGVITSTIPAIVALFAWLILREKPNGRALVSIALAIAGVVTINLANGGASAHDAGAASSGSLTGNLLI LGAVCCESIYVILSRRLTQTLAPIDICAYTHLFGLCLMLPLGATALWQFDYASVPAGTWALVVWYGLSASIFSFWLWMKG IRHVPGSLAGVFSAVLPVAAAAYGIAFLGERPTPAHGIALACVVTGIVLASLRVKRAPAAAA
Sequences:
>Translated_302_residues MNRYALFLILSMLFVGSNVGIGKSIVVFVPVAILATLRFVIAIAVLWPLFSPVKMRAVRRAEWLNLFLQAFFGTFMFTLL MLNGVQRTSAVAAGVITSTIPAIVALFAWLILREKPNGRALVSIALAIAGVVTINLANGGASAHDAGAASSGSLTGNLLI LGAVCCESIYVILSRRLTQTLAPIDICAYTHLFGLCLMLPLGATALWQFDYASVPAGTWALVVWYGLSASIFSFWLWMKG IRHVPGSLAGVFSAVLPVAAAAYGIAFLGERPTPAHGIALACVVTGIVLASLRVKRAPAAAA >Mature_302_residues MNRYALFLILSMLFVGSNVGIGKSIVVFVPVAILATLRFVIAIAVLWPLFSPVKMRAVRRAEWLNLFLQAFFGTFMFTLL MLNGVQRTSAVAAGVITSTIPAIVALFAWLILREKPNGRALVSIALAIAGVVTINLANGGASAHDAGAASSGSLTGNLLI LGAVCCESIYVILSRRLTQTLAPIDICAYTHLFGLCLMLPLGATALWQFDYASVPAGTWALVVWYGLSASIFSFWLWMKG IRHVPGSLAGVFSAVLPVAAAAYGIAFLGERPTPAHGIALACVVTGIVLASLRVKRAPAAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31845; Mature: 31845
Theoretical pI: Translated: 10.49; Mature: 10.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRYALFLILSMLFVGSNVGIGKSIVVFVPVAILATLRFVIAIAVLWPLFSPVKMRAVRR CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AEWLNLFLQAFFGTFMFTLLMLNGVQRTSAVAAGVITSTIPAIVALFAWLILREKPNGRA HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LVSIALAIAGVVTINLANGGASAHDAGAASSGSLTGNLLILGAVCCESIYVILSRRLTQT HHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LAPIDICAYTHLFGLCLMLPLGATALWQFDYASVPAGTWALVVWYGLSASIFSFWLWMKG HHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IRHVPGSLAGVFSAVLPVAAAAYGIAFLGERPTPAHGIALACVVTGIVLASLRVKRAPAA HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC AA CC >Mature Secondary Structure MNRYALFLILSMLFVGSNVGIGKSIVVFVPVAILATLRFVIAIAVLWPLFSPVKMRAVRR CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AEWLNLFLQAFFGTFMFTLLMLNGVQRTSAVAAGVITSTIPAIVALFAWLILREKPNGRA HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LVSIALAIAGVVTINLANGGASAHDAGAASSGSLTGNLLILGAVCCESIYVILSRRLTQT HHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LAPIDICAYTHLFGLCLMLPLGATALWQFDYASVPAGTWALVVWYGLSASIFSFWLWMKG HHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IRHVPGSLAGVFSAVLPVAAAAYGIAFLGERPTPAHGIALACVVTGIVLASLRVKRAPAA HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC AA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]