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The map label for this gene is yagI [H]

Identifier: 115352220

GI number: 115352220

Start: 2380114

End: 2380923

Strand: Direct

Name: yagI [H]

Synonym: Bamb_2169

Alternate gene names: 115352220

Gene position: 2380114-2380923 (Clockwise)

Preceding gene: 115352207

Following gene: 115352222

Centisome position: 66.92

GC content: 67.78

Gene sequence:

>810_bases
ATGAGCCAACCCACCCCGGATTCCAAAACGTCGATCCAAGTGATCGAACGCATGATGCGGCTGCTGGACGCGCTCGCCGC
GCACAGCGACCCCGTCAGCCTGAAGGAGCTTGCGCAACGTACGGAGCTGCATCCGTCGACCGCGCACCGCATCCTCAACG
ACATGGTGACCTGTCGCCTCGTCGACCGCTCCGATCCCGGCACGTACCGGCTCGGCATGCGGCTGCTCGAGCTCGGCAAT
CTCGTGAAGGCGCGCCTGTCGGTCCGTGACGCGGCGCTGATGCCGATGCGCGAGCTGCACCGCCTGACGGGCCAGACCGT
GAACCTGTCGGTACGCCAGGGCGACGAAATCGTCTACATCGAGCGCGCGTATTCGGAACGCTCGGGGATGCAGGTCGTCC
GCGCGATCGGCGGCCGTGCGCCGCTGCATCTGACGTCGGTCGGCAAGCTATTCCTCGCGGTCGACGAAACGTCGCGCGTG
CGCGCCTACGCGACGCGCACCGGGCTGTCCGGCCATACGCAGAACAGCATTACCGACATCGCGAAGCTCGAGCGCGAATT
AACGCTCGTGCGCCAGCAATCGTGCGCGCGCGACAACGAGGAACTGGAGCTGGGCGTGCGCTGCATCGCGGCCGGCATCT
ACGACGACTCGGGCAAGCTCGTCGCGGGCCTGTCGCTGTCGGCACCGGCCGACCGCCTGCAGGACGCGTGGCTCGGCCAG
TTGAGCCGCACCGCGCTGACCATCTCGGAATCGCTCGGCTACCGCCCCGCGCCCGCGAAGGAGACGGAAGGACTGCAGCG
GCACGCATGA

Upstream 100 bases:

>100_bases
TCAGGAAACGAGGACTTCCTCGAACGGCGTTCGCTTTTTTCACAATACGAGATACAATCGACGCAACACCGCTTGACGCG
TCAACCGATTCTCCCCCGAC

Downstream 100 bases:

>100_bases
GCCGCACTACCCGCCGCACGGCGGCCGGACGAAAAAAAGCCCCGCGATTGCGGGGCTTTTTGTTTGCGGCAACCGGTGCG
GCGGCAAACCGCCGCGACGC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAVDETSRV
RAYATRTGLSGHTQNSITDIAKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQ
LSRTALTISESLGYRPAPAKETEGLQRHA

Sequences:

>Translated_269_residues
MSQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAVDETSRV
RAYATRTGLSGHTQNSITDIAKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQ
LSRTALTISESLGYRPAPAKETEGLQRHA
>Mature_268_residues
SQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGNL
VKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAVDETSRVR
AYATRTGLSGHTQNSITDIAKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQL
SRTALTISESLGYRPAPAKETEGLQRHA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=256, Percent_Identity=33.203125, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1788131, Length=259, Percent_Identity=33.5907335907336, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789999, Length=250, Percent_Identity=30, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786715, Length=261, Percent_Identity=30.6513409961686, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87082359, Length=237, Percent_Identity=31.2236286919831, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790752, Length=240, Percent_Identity=27.9166666666667, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788581, Length=253, Percent_Identity=25.296442687747, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29648; Mature: 29517

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEEE
VDRSDPGTYRLGMRLLELGNLVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYI
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCEEEEE
ERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAVDETSRVRAYATRTGLSGHTQNSITDI
EECCCCHHHHHHHHHHCCCCCEEHCCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHH
AKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEECCCCCEEEEEECCCCHHHHHHHHHHH
LSRTALTISESLGYRPAPAKETEGLQRHA
HHHHHHHHHHHCCCCCCCCHHHCCHHCCC
>Mature Secondary Structure 
SQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEEE
VDRSDPGTYRLGMRLLELGNLVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYI
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCEEEEE
ERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAVDETSRVRAYATRTGLSGHTQNSITDI
EECCCCHHHHHHHHHHCCCCCEEHCCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHH
AKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEECCCCCEEEEEECCCCHHHHHHHHHHH
LSRTALTISESLGYRPAPAKETEGLQRHA
HHHHHHHHHHHCCCCCCCCHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]