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The map label for this gene is ycfD [H]

Identifier: 115352178

GI number: 115352178

Start: 2339692

End: 2340915

Strand: Direct

Name: ycfD [H]

Synonym: Bamb_2127

Alternate gene names: 115352178

Gene position: 2339692-2340915 (Clockwise)

Preceding gene: 115352176

Following gene: 115352179

Centisome position: 65.79

GC content: 66.09

Gene sequence:

>1224_bases
ATGCGCAACCGGTCTCAAGCCGAACCGCGGGATGCCGCTGCCGCCCCGCTCGGCGCGCCTCCTTCCGATCTTCCCACACC
GCTGCTCGGCGGTCTCTCGCCGGCGCAATTCATGCGCCGCTACTGGCAGAAAAAGCCGCTGTTGATCCGTCAGGCGATCC
CCGGCGTGAAGCCGCCGGTCACGCGCGACGCGCTGTTCGAACTGGCAGCCGACTATGACGCCGAATCGCGACTGATCACC
CATTTTCGTAACAAGTGGCAACTCGCGCACGGCCCATTCGAGCCCGGCGCGCTGCCCGCCGTGTCGCGCAAGTCCTGGTC
CCTGCTCGTGCAGGGGCTCGACCTGCACGTCGACGCGGCCCGCGCGCTGCTCGACCGCTTCCGCTTCATCCCGGACGCGC
GCCTCGACGACCTGATGATTTCGTACGCGACGGACGGCGGCGGCGTCGGCCCGCACTTCGACTCGTATGACGTGTTCCTG
CTGCAGGTCGAAGGCCGGCGCCGCTGGCGCATCGGCGCGCAGAAGGATCTGTCGCTGCAGCCGGACGTGCCGCTGAAGAT
CCTCGAGCATTTCGAGCCGAGCGACGAGTGGGTACTGGAGCCGGGCGACATGTTGTACCTGCCGCCGCACATCGCGCACG
ACGGCGTGGCCGAAGGCGACGAATGCATGACCTGCTCGATCGGCTTTCGGGCACCGTCCGCCGGCGAGCTGGGCGCGCAA
TTCCTGTACTACCTCGCGGAACGCGGCGGCCTGCGTGATGGGCGCGGCGACGCGCTCTACCGCGACCCGAAGCAGCCGGC
GGTCGACACGCCGGCACAACTGCCGCCAGCGATGGTCGAGCGCGTCGCCGAGATCGTCGATGCGATCCGCTGGCGCAAGC
GCGACGTCGCCGAATTCCTCGGCTGCTATCTGAGCGAGCCGAAATCGAGCGTGGTATTCGAGCCGCCGGCACGCCCGCTG
TCCGAGGCGGCGTTCGTCACGCAAGCTTCTCGCCGAGGCGTATATCTCGACAGAAGGGCCGCATTGATGTATAACGCGCG
ATCGTACTTCATTAATGGTGAAGAAGAACCGCTCGAGCAAGCCGGCGAATGGCTGCCCGAACTGGCCAATCTGCGCTATA
TGGAGGCGAAACGGTTTGTAACACTCTCCCGGGCTCCCTCCATGACAGCCTTGCTGCACGAGTGGTATTGTGCGGGCTGG
ATACGGGTCGGAAACCGGATTTAG

Upstream 100 bases:

>100_bases
ATCAGGTTGCCTTGTGCATCCGACAACTTGTAAGTGACAGACACGACGGTGTTTTTTGCGATTTTCATCCAATTCTCCCA
AATACAAGTCTCATTATACG

Downstream 100 bases:

>100_bases
TGAGTTGCCCCGTATGCCCATGCAGATCAAATTCTGTATGGGAAAGACAACGTATTGACCCCGCATTTGTCGACGGTCGA
TAGGAAAGTGCATATAATTT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MRNRSQAEPRDAAAAPLGAPPSDLPTPLLGGLSPAQFMRRYWQKKPLLIRQAIPGVKPPVTRDALFELAADYDAESRLIT
HFRNKWQLAHGPFEPGALPAVSRKSWSLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFL
LQVEGRRRWRIGAQKDLSLQPDVPLKILEHFEPSDEWVLEPGDMLYLPPHIAHDGVAEGDECMTCSIGFRAPSAGELGAQ
FLYYLAERGGLRDGRGDALYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSSVVFEPPARPL
SEAAFVTQASRRGVYLDRRAALMYNARSYFINGEEEPLEQAGEWLPELANLRYMEAKRFVTLSRAPSMTALLHEWYCAGW
IRVGNRI

Sequences:

>Translated_407_residues
MRNRSQAEPRDAAAAPLGAPPSDLPTPLLGGLSPAQFMRRYWQKKPLLIRQAIPGVKPPVTRDALFELAADYDAESRLIT
HFRNKWQLAHGPFEPGALPAVSRKSWSLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFL
LQVEGRRRWRIGAQKDLSLQPDVPLKILEHFEPSDEWVLEPGDMLYLPPHIAHDGVAEGDECMTCSIGFRAPSAGELGAQ
FLYYLAERGGLRDGRGDALYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSSVVFEPPARPL
SEAAFVTQASRRGVYLDRRAALMYNARSYFINGEEEPLEQAGEWLPELANLRYMEAKRFVTLSRAPSMTALLHEWYCAGW
IRVGNRI
>Mature_407_residues
MRNRSQAEPRDAAAAPLGAPPSDLPTPLLGGLSPAQFMRRYWQKKPLLIRQAIPGVKPPVTRDALFELAADYDAESRLIT
HFRNKWQLAHGPFEPGALPAVSRKSWSLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFL
LQVEGRRRWRIGAQKDLSLQPDVPLKILEHFEPSDEWVLEPGDMLYLPPHIAHDGVAEGDECMTCSIGFRAPSAGELGAQ
FLYYLAERGGLRDGRGDALYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSSVVFEPPARPL
SEAAFVTQASRRGVYLDRRAALMYNARSYFINGEEEPLEQAGEWLPELANLRYMEAKRFVTLSRAPSMTALLHEWYCAGW
IRVGNRI

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=369, Percent_Identity=33.6043360433604, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 45658; Mature: 45658

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRSQAEPRDAAAAPLGAPPSDLPTPLLGGLSPAQFMRRYWQKKPLLIRQAIPGVKPPV
CCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCC
TRDALFELAADYDAESRLITHFRNKWQLAHGPFEPGALPAVSRKSWSLLVQGLDLHVDAA
CHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHH
RALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVEGRRRWRIGAQKDLSLQ
HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCC
PDVPLKILEHFEPSDEWVLEPGDMLYLPPHIAHDGVAEGDECMTCSIGFRAPSAGELGAQ
CCCCHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
FLYYLAERGGLRDGRGDALYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFL
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GCYLSEPKSSVVFEPPARPLSEAAFVTQASRRGVYLDRRAALMYNARSYFINGEEEPLEQ
HHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHEECCCEEEECCCCCHHHH
AGEWLPELANLRYMEAKRFVTLSRAPSMTALLHEWYCAGWIRVGNRI
HHHHHHHHHCCHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRNRSQAEPRDAAAAPLGAPPSDLPTPLLGGLSPAQFMRRYWQKKPLLIRQAIPGVKPPV
CCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCC
TRDALFELAADYDAESRLITHFRNKWQLAHGPFEPGALPAVSRKSWSLLVQGLDLHVDAA
CHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHH
RALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVEGRRRWRIGAQKDLSLQ
HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCC
PDVPLKILEHFEPSDEWVLEPGDMLYLPPHIAHDGVAEGDECMTCSIGFRAPSAGELGAQ
CCCCHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
FLYYLAERGGLRDGRGDALYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFL
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GCYLSEPKSSVVFEPPARPLSEAAFVTQASRRGVYLDRRAALMYNARSYFINGEEEPLEQ
HHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHEECCCEEEECCCCCHHHH
AGEWLPELANLRYMEAKRFVTLSRAPSMTALLHEWYCAGWIRVGNRI
HHHHHHHHHCCHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]