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The map label for this gene is ylbK [H]

Identifier: 115352140

GI number: 115352140

Start: 2293619

End: 2294527

Strand: Direct

Name: ylbK [H]

Synonym: Bamb_2089

Alternate gene names: 115352140

Gene position: 2293619-2294527 (Clockwise)

Preceding gene: 115352137

Following gene: 115352147

Centisome position: 64.49

GC content: 68.65

Gene sequence:

>909_bases
ATGTCGTCCCCTCGCCTGTCGCGCCGTCACTTCACGATCGCGTGCGCGTCCGCCAGCCTCGCCGCCTGTACGTCGATCGG
CGACAAATCCCGTCCCGCGCAGTCGCAGGAAAAACCCGTGAAGATCGGCATCGCGCTCGGCGGCGGCGCCGCCCGCGGCT
TCTCGCACATCGGCGTGCTGAAGGCGCTGGAGGCACGCGGCATCCCGGTCGAGCTCGTCGCGGGCACGAGCGCCGGCTCG
GTGGTCGCCGCGCTGTACGCGTCCGGGATGAGCGCGCTGCAGATCAACAAGATCGCACTCGACATGGATCAGGCGGCGAT
CAGCGACTGGGCGCTGCCGTTCCGCTCGCGCGGCTTGCTGCAGGGCGTCGCGCTGCAGAACTTCCTGAACAAGACGCTCA
ACAACCGGCCGATCGAGAAGATGGCGAAGCCGCTCGGCATCGTCGCGACAGATCTGCAGAGCGGCCAGCCGATCCTGTTC
CAGCAGGGCAATACGGGGCTCGCGGTGCGCGCGTCGTGCAGCGTGCCGTCGGTGTTCGAACCGGTGAGGATCGGCAACCG
CGAGTACGTCGACGGCGGCCTCGTGAGTCCGGTGCCCGCGTCGTTCGCACGCAAGATGGGCGCGAGCTTCGTGATCGCGG
TCGACATCTCGGCGCGGCCGGACGGCGCGGCGACCAACAACCCGATCGAGATGCTGCTGCAGACCTTCACGATCATGGGC
CAGACGATCAAGTCCTACGAGCTCGACAAGTACGCGGACGTCGTGATCCGCCCGAACCTCGCGGCGATGGGCGGCAGCGA
CTTCAACCAGCGCAACGCGGCAATCCTCGCGGGCGAGGAAGCCGTCGCGCGTATCATGCCCGAGCTGCAGCGCAAGCTCG
CGGCGGCCCGCGGCGTCGCGGCGGCGTAA

Upstream 100 bases:

>100_bases
GGCGCCGCGCCGGCCGCCCGGATTCCGCCGCACGGCCGCTCGGAACCTATCGCCGCCGCGGGCCACACGGCCCGCCGCCA
AGCCGCCGGAGAATCAATCG

Downstream 100 bases:

>100_bases
TCGGACGCAGCGCGGTGCGCGACGCATGACGGCGCGCCGCCCCGCCGGTTCCGCGCACCTCAAAACAAAAAACCCTGCCG
CCTTTCGGTGACAGGGTTTT

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSSPRLSRRHFTIACASASLAACTSIGDKSRPAQSQEKPVKIGIALGGGAARGFSHIGVLKALEARGIPVELVAGTSAGS
VVAALYASGMSALQINKIALDMDQAAISDWALPFRSRGLLQGVALQNFLNKTLNNRPIEKMAKPLGIVATDLQSGQPILF
QQGNTGLAVRASCSVPSVFEPVRIGNREYVDGGLVSPVPASFARKMGASFVIAVDISARPDGAATNNPIEMLLQTFTIMG
QTIKSYELDKYADVVIRPNLAAMGGSDFNQRNAAILAGEEAVARIMPELQRKLAAARGVAAA

Sequences:

>Translated_302_residues
MSSPRLSRRHFTIACASASLAACTSIGDKSRPAQSQEKPVKIGIALGGGAARGFSHIGVLKALEARGIPVELVAGTSAGS
VVAALYASGMSALQINKIALDMDQAAISDWALPFRSRGLLQGVALQNFLNKTLNNRPIEKMAKPLGIVATDLQSGQPILF
QQGNTGLAVRASCSVPSVFEPVRIGNREYVDGGLVSPVPASFARKMGASFVIAVDISARPDGAATNNPIEMLLQTFTIMG
QTIKSYELDKYADVVIRPNLAAMGGSDFNQRNAAILAGEEAVARIMPELQRKLAAARGVAAA
>Mature_301_residues
SSPRLSRRHFTIACASASLAACTSIGDKSRPAQSQEKPVKIGIALGGGAARGFSHIGVLKALEARGIPVELVAGTSAGSV
VAALYASGMSALQINKIALDMDQAAISDWALPFRSRGLLQGVALQNFLNKTLNNRPIEKMAKPLGIVATDLQSGQPILFQ
QGNTGLAVRASCSVPSVFEPVRIGNREYVDGGLVSPVPASFARKMGASFVIAVDISARPDGAATNNPIEMLLQTFTIMGQ
TIKSYELDKYADVVIRPNLAAMGGSDFNQRNAAILAGEEAVARIMPELQRKLAAARGVAAA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656037, Length=232, Percent_Identity=33.1896551724138, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI260656043, Length=232, Percent_Identity=33.1896551724138, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI260656041, Length=233, Percent_Identity=33.4763948497854, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI116256487, Length=233, Percent_Identity=33.4763948497854, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI260656039, Length=233, Percent_Identity=33.4763948497854, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI148727335, Length=194, Percent_Identity=32.9896907216495, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI148727290, Length=194, Percent_Identity=32.9896907216495, Blast_Score=94, Evalue=1e-19,
Organism=Escherichia coli, GI226510936, Length=294, Percent_Identity=34.0136054421769, Blast_Score=138, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI71997289, Length=164, Percent_Identity=28.6585365853659, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71997299, Length=164, Percent_Identity=28.6585365853659, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=186, Percent_Identity=30.1075268817204, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281376913, Length=193, Percent_Identity=30.5699481865285, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI28571388, Length=193, Percent_Identity=29.5336787564767, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 31585; Mature: 31454

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPRLSRRHFTIACASASLAACTSIGDKSRPAQSQEKPVKIGIALGGGAARGFSHIGVL
CCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHH
KALEARGIPVELVAGTSAGSVVAALYASGMSALQINKIALDMDQAAISDWALPFRSRGLL
HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEHHEEECHHHHHHHHCCCHHHCHHH
QGVALQNFLNKTLNNRPIEKMAKPLGIVATDLQSGQPILFQQGNTGLAVRASCSVPSVFE
HHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCC
PVRIGNREYVDGGLVSPVPASFARKMGASFVIAVDISARPDGAATNNPIEMLLQTFTIMG
HHHCCCEEECCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
QTIKSYELDKYADVVIRPNLAAMGGSDFNQRNAAILAGEEAVARIMPELQRKLAAARGVA
HHHHHCCCCHHHCEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCC
AA
CC
>Mature Secondary Structure 
SSPRLSRRHFTIACASASLAACTSIGDKSRPAQSQEKPVKIGIALGGGAARGFSHIGVL
CCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHH
KALEARGIPVELVAGTSAGSVVAALYASGMSALQINKIALDMDQAAISDWALPFRSRGLL
HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEHHEEECHHHHHHHHCCCHHHCHHH
QGVALQNFLNKTLNNRPIEKMAKPLGIVATDLQSGQPILFQQGNTGLAVRASCSVPSVFE
HHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCC
PVRIGNREYVDGGLVSPVPASFARKMGASFVIAVDISARPDGAATNNPIEMLLQTFTIMG
HHHCCCEEECCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
QTIKSYELDKYADVVIRPNLAAMGGSDFNQRNAAILAGEEAVARIMPELQRKLAAARGVA
HHHHHCCCCHHHCEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCC
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]