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The map label for this gene is yeaM [H]

Identifier: 115352137

GI number: 115352137

Start: 2289248

End: 2290129

Strand: Direct

Name: yeaM [H]

Synonym: Bamb_2086

Alternate gene names: 115352137

Gene position: 2289248-2290129 (Clockwise)

Preceding gene: 115352135

Following gene: 115352140

Centisome position: 64.37

GC content: 70.29

Gene sequence:

>882_bases
ATGAATCCGCCTGCCCAAGCCGACACATCGAACCCCTACGACGTCATCGACATCCCGCCCGAGTTCGCGCCGACCCGCGT
CCACCCGATGCGCGTGCGGGCGCGGCAGGTGGATGCCGGCCGCCGGATCCCGCTGCACACGCATGCGTGGGCGCAGCTCG
CGTACGCGTCGCGCGGGGTGCTGCGCGTCGCGACGACCGGGACGACGTGGATGGTGCCGCCGTCCCGCGCGATCTGGGTA
CCGCCGCACGTCACGCACGAAGTCGTGATCGTCGAGGACGCGTATCTGCGCACGCTGTATATCGACGAGTCGATCGTGCC
GGACGGGCTCGATGCATGCCGGGTGGTCGAGGTGACGGGCTTGCTGCGCGAACTGATCGTCGCGCTCGACGCGCGCGACC
TGAGCGATGCGCGCGAGCGGCTGCTGTGCGGGCTCGTGCTCGACGAGCTGAGCCGCGCCGAACCGCTGCCGCTCGCGGTG
CCGATGCCCGACGAGAAACGCCTGCGCATGCTGTGCGAGTCGGTGCTCGCGCAACCGGCGCATGCGGAATCGCTCGAGCA
CTGGGCAAGCGAGGTCGGCGCGAGCACGCGCACGATTTCGCGGCTCTTCAAGCAGGAACTGGGCGTGAGCTTTTCGCAGT
GGCGGCAGCAGGCGCTGCTCGCGCGCGCGATTCCGCTGTTGAACCAGGGGCGTCCGCTGTCGCATATCGCGCGCGAGCTC
GGCTACCAGAGCCAGAGTGCGTTTTCGGCGATGTTCCGGCGCGCGTTCGGCGAAAGCCCGCGCGCGTTCATGCTGCGCGG
CTACGAGCACCGCGGCGCGGAGGACGGCATCGCGACGGACGACGCCCTCGACGACGACGACGCGTTCGGCACCGCCCGCT
GA

Upstream 100 bases:

>100_bases
GTTCATTTGAACGGTGCATTATCGGCCGAAAAACCGCCGCATGCGCCTGCGCGGCGCCTTCTAAAATAACGGCATCGCCG
CCGCGCCGACCGAGTCGTCC

Downstream 100 bases:

>100_bases
CGGTCTCCGCGCTGCACCGTTATTCGCTCAGACCGTACGCACCATGTGGCGGATCGAGCCGAGCTGCGCGAGCCTCGGCC
CGGTGACGCGGTAGCCCATT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNPPAQADTSNPYDVIDIPPEFAPTRVHPMRVRARQVDAGRRIPLHTHAWAQLAYASRGVLRVATTGTTWMVPPSRAIWV
PPHVTHEVVIVEDAYLRTLYIDESIVPDGLDACRVVEVTGLLRELIVALDARDLSDARERLLCGLVLDELSRAEPLPLAV
PMPDEKRLRMLCESVLAQPAHAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGAEDGIATDDALDDDDAFGTAR

Sequences:

>Translated_293_residues
MNPPAQADTSNPYDVIDIPPEFAPTRVHPMRVRARQVDAGRRIPLHTHAWAQLAYASRGVLRVATTGTTWMVPPSRAIWV
PPHVTHEVVIVEDAYLRTLYIDESIVPDGLDACRVVEVTGLLRELIVALDARDLSDARERLLCGLVLDELSRAEPLPLAV
PMPDEKRLRMLCESVLAQPAHAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGAEDGIATDDALDDDDAFGTAR
>Mature_293_residues
MNPPAQADTSNPYDVIDIPPEFAPTRVHPMRVRARQVDAGRRIPLHTHAWAQLAYASRGVLRVATTGTTWMVPPSRAIWV
PPHVTHEVVIVEDAYLRTLYIDESIVPDGLDACRVVEVTGLLRELIVALDARDLSDARERLLCGLVLDELSRAEPLPLAV
PMPDEKRLRMLCESVLAQPAHAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGAEDGIATDDALDDDDAFGTAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=226, Percent_Identity=32.7433628318584, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 32614; Mature: 32614

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPAQADTSNPYDVIDIPPEFAPTRVHPMRVRARQVDAGRRIPLHTHAWAQLAYASRGV
CCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCE
LRVATTGTTWMVPPSRAIWVPPHVTHEVVIVEDAYLRTLYIDESIVPDGLDACRVVEVTG
EEEEECCCEEEECCCCEEECCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHH
LLRELIVALDARDLSDARERLLCGLVLDELSRAEPLPLAVPMPDEKRLRMLCESVLAQPA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCC
HAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGAEDGIATDDALDDDDAFGTAR
CCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPPAQADTSNPYDVIDIPPEFAPTRVHPMRVRARQVDAGRRIPLHTHAWAQLAYASRGV
CCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCE
LRVATTGTTWMVPPSRAIWVPPHVTHEVVIVEDAYLRTLYIDESIVPDGLDACRVVEVTG
EEEEECCCEEEECCCCEEECCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHH
LLRELIVALDARDLSDARERLLCGLVLDELSRAEPLPLAVPMPDEKRLRMLCESVLAQPA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCC
HAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGAEDGIATDDALDDDDAFGTAR
CCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]